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Mutant Information

Mutant Name	FN-139 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-139 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 19

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	26686582	G-A	HET	INTERGENIC
SBS	Chr1	28683614	C-G	HET	INTERGENIC
SBS	Chr1	39305455	C-G	HET	INTERGENIC
SBS	Chr2	919861	C-T	HET	INTRON
SBS	Chr2	24215014	G-A	HET	INTERGENIC
SBS	Chr2	24215015	C-A	HET	INTERGENIC
SBS	Chr2	33910998	A-T	HET	INTERGENIC
SBS	Chr3	3033643	C-T	HET	INTERGENIC
SBS	Chr5	11530442	T-C	HET	SYNONYMOUS_CODING
SBS	Chr5	11530447	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g19764
SBS	Chr6	23119935	C-T	HET	INTRON
SBS	Chr6	23471549	A-C	HET	UTR_3_PRIME
SBS	Chr6	29659268	G-T	HET	INTRON
SBS	Chr7	13084502	C-T	HET	UTR_3_PRIME
SBS	Chr9	2913816	G-A	HET	INTERGENIC
SBS	Chr9	13950232	G-A	HET	INTERGENIC
SBS	Chr11	3128420	G-A	HET	INTRON
SBS	Chr12	4574699	G-T	HET	INTERGENIC
SBS	Chr12	8954890	G-T	HET	INTRON

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	3939116	3939122	6	LOC_Os04g07400
Deletion	Chr10	4502742	4502751	9	LOC_Os10g08319
Deletion	Chr11	4543936	4543942	6
Deletion	Chr4	6542261	6542266	5
Deletion	Chr8	9107670	9107671	1
Deletion	Chr10	10090447	10091718	1271
Deletion	Chr4	11347888	11347889	1
Deletion	Chr9	15780058	15780061	3
Deletion	Chr4	19947273	19947279	6
Deletion	Chr4	20574010	20574011	1
Deletion	Chr3	25829008	25829019	11
Deletion	Chr8	27717001	27741000	24000	4
Deletion	Chr2	32825441	32825448	7
Deletion	Chr1	39305448	39305449	1

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	34263370	34263370	1	LOC_Os03g60240
Insertion	Chr5	2567681	2567682	2
Insertion	Chr9	20166224	20166225	2
Insertion	Chr7	3293903	3293903	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	4205513	4254967	LOC_Os11g08110
Inversion	Chr11	12778179	14009410	LOC_Os11g24550
Inversion	Chr3	13735188	22857632	2
Inversion	Chr3	22857652	23238765	LOC_Os03g41120

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	10091707	Chr3	5956978	2
Translocation	Chr12	12338380	Chr5	9524312	2
Translocation	Chr12	12338386	Chr5	9529657	LOC_Os12g21910
Translocation	Chr8	21174223	Chr6	2350648	LOC_Os08g33830