Search Results
| Mutant Information |
|---|
| Mutant Name | FN-14 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-14 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 15
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr3 | 4260960 | C-T | Homo | UTR_5_PRIME | |
| SBS | Chr4 | 7420905 | C-T | Homo | INTRON | |
| SBS | Chr4 | 15965226 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 17377827 | G-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os04g29310 |
| SBS | Chr4 | 33511067 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 20451218 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 16966737 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 8452685 | A-T | Homo | INTERGENIC | |
| SBS | Chr8 | 8452836 | C-G | Homo | INTERGENIC | |
| SBS | Chr8 | 16761388 | T-C | Homo | INTRON | |
| SBS | Chr10 | 4636749 | A-G | Homo | INTERGENIC | |
| SBS | Chr10 | 18749169 | A-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os10g35130 |
| SBS | Chr11 | 5516697 | T-G | Homo | INTERGENIC | |
| SBS | Chr12 | 10915341 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 26806715 | A-G | HET | INTERGENIC |
Deletions: 17
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr1 | 2258306 | 2258308 | 2 | |
| Deletion | Chr5 | 2385144 | 2385145 | 1 | LOC_Os05g04950 |
| Deletion | Chr4 | 4587317 | 4587324 | 7 | |
| Deletion | Chr8 | 5175708 | 5175730 | 22 | |
| Deletion | Chr9 | 6069931 | 6069933 | 2 | |
| Deletion | Chr9 | 7472830 | 7472848 | 18 | |
| Deletion | Chr8 | 10272027 | 10272028 | 1 | |
| Deletion | Chr2 | 12863238 | 12863264 | 26 | |
| Deletion | Chr11 | 14588991 | 14588992 | 1 | |
| Deletion | Chr9 | 17510671 | 17510687 | 16 | |
| Deletion | Chr5 | 17711119 | 17711127 | 8 | |
| Deletion | Chr6 | 17986071 | 17986072 | 1 | |
| Deletion | Chr7 | 19516373 | 19516383 | 10 | |
| Deletion | Chr6 | 21273001 | 21343000 | 70000 | 4 |
| Deletion | Chr11 | 22104001 | 22130000 | 26000 | 3 |
| Deletion | Chr3 | 26725857 | 26725858 | 1 | |
| Deletion | Chr5 | 27490006 | 27490016 | 10 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr5 | 19983280 | 19983280 | 1 |
Inversions: 5
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr1 | 76122 | 25753480 | 2 |
| Inversion | Chr12 | 3731337 | 4117919 | LOC_Os12g07510 |
| Inversion | Chr12 | 3731364 | 4117925 | LOC_Os12g07510 |
| Inversion | Chr6 | 19761921 | 21343148 | |
| Inversion | Chr6 | 21272821 | 21429594 | LOC_Os06g36310 |
No Translocation