Search Results
| Mutant Information |
|---|
| Mutant Name | FN-141 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-141 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 27
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 16457638 | G-T | HET | INTERGENIC | |
| SBS | Chr1 | 16584544 | G-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr1 | 37355153 | A-T | HET | INTRON | |
| SBS | Chr2 | 294985 | A-T | HET | INTERGENIC | |
| SBS | Chr3 | 18048397 | G-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os03g31620 |
| SBS | Chr3 | 36279668 | G-A | HET | INTERGENIC | |
| SBS | Chr4 | 9537826 | C-T | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr4 | 13578648 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g23739 |
| SBS | Chr4 | 30125546 | G-T | HOMO | INTERGENIC | |
| SBS | Chr5 | 5972681 | T-A | HOMO | INTRON | |
| SBS | Chr5 | 5972695 | G-A | HOMO | INTRON | |
| SBS | Chr5 | 10347914 | G-A | HET | INTERGENIC | |
| SBS | Chr5 | 12281711 | C-A | HOMO | INTERGENIC | |
| SBS | Chr5 | 29886601 | T-A | HOMO | INTRON | |
| SBS | Chr6 | 21709826 | G-A | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr6 | 21753753 | G-T | HOMO | INTERGENIC | |
| SBS | Chr6 | 21753754 | T-A | HOMO | INTERGENIC | |
| SBS | Chr7 | 11210055 | C-T | HET | INTERGENIC | |
| SBS | Chr7 | 16466796 | G-A | HET | INTRON | |
| SBS | Chr8 | 1303623 | A-T | HET | INTRON | |
| SBS | Chr8 | 2343447 | G-T | HET | INTERGENIC | |
| SBS | Chr8 | 2596687 | C-T | HET | INTERGENIC | |
| SBS | Chr9 | 7260586 | T-C | HET | INTERGENIC | |
| SBS | Chr10 | 23063935 | G-A | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr11 | 2101113 | G-C | HOMO | INTERGENIC | |
| SBS | Chr11 | 18427034 | C-T | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr12 | 9013707 | G-A | HOMO | INTERGENIC |
Deletions: 17
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 1741021 | 1741034 | 13 | LOC_Os06g04169 |
| Deletion | Chr1 | 2664097 | 2664104 | 7 | |
| Deletion | Chr8 | 5320438 | 5320451 | 13 | |
| Deletion | Chr8 | 5321001 | 5346000 | 25000 | 4 |
| Deletion | Chr8 | 5458068 | 5466351 | 8283 | LOC_Os08g09420 |
| Deletion | Chr5 | 5813001 | 5960000 | 147000 | 14 |
| Deletion | Chr2 | 6307595 | 6307600 | 5 | LOC_Os02g12120 |
| Deletion | Chr9 | 6393619 | 6591929 | 198310 | 31 |
| Deletion | Chr9 | 6599858 | 6607753 | 7895 | |
| Deletion | Chr2 | 8536691 | 8536697 | 6 | |
| Deletion | Chr3 | 16120308 | 16120322 | 14 | |
| Deletion | Chr11 | 19069264 | 19069266 | 2 | LOC_Os11g32270 |
| Deletion | Chr8 | 21999675 | 21999680 | 5 | |
| Deletion | Chr6 | 22939581 | 22956445 | 16864 | 2 |
| Deletion | Chr6 | 24281284 | 24281285 | 1 | LOC_Os06g40730 |
| Deletion | Chr1 | 27326148 | 27326151 | 3 | LOC_Os01g47760 |
| Deletion | Chr2 | 31726758 | 31726759 | 1 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 5781319 | 5781319 | 1 | |
| Insertion | Chr4 | 11057409 | 11057409 | 1 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr8 | 1302910 | 5346407 | 2 |
| Inversion | Chr4 | 20420462 | 23257158 |
No Translocation