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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11929906	G-C	HET	INTERGENIC
SBS	Chr1	2223140	G-A	HET	INTERGENIC
SBS	Chr1	22708561	G-A	HOMO	INTERGENIC
SBS	Chr1	28681953	C-T	HOMO	INTERGENIC
SBS	Chr10	3809088	T-A	HET	INTERGENIC
SBS	Chr11	10265783	C-G	HET	INTRON
SBS	Chr11	8291868	C-T	HET	INTERGENIC
SBS	Chr12	14676904	C-A	HET	INTERGENIC
SBS	Chr12	16130772	C-G	HET	INTRON
SBS	Chr12	25558978	G-A	HET	UTR_3_PRIME
SBS	Chr12	8626714	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g15120
SBS	Chr2	17501427	G-A	HET	INTRON
SBS	Chr2	27076671	A-G	HET	INTERGENIC
SBS	Chr3	10228821	C-A	HET	INTERGENIC
SBS	Chr3	30163860	G-A	HET	INTRON
SBS	Chr3	34996627	A-T	HET	UTR_5_PRIME
SBS	Chr3	34996628	C-T	HET	INTERGENIC
SBS	Chr4	16110373	C-A	HET	INTERGENIC
SBS	Chr4	16269188	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g27520
SBS	Chr4	18724775	C-T	HET	INTERGENIC
SBS	Chr4	24017693	T-A	HET	INTERGENIC
SBS	Chr4	24526899	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g41330
SBS	Chr4	545004	A-T	HOMO	INTERGENIC
SBS	Chr5	2018313	G-A	HET	INTERGENIC
SBS	Chr5	22032061	A-G	HOMO	INTERGENIC
SBS	Chr6	14616789	C-G	HOMO	UTR_5_PRIME
SBS	Chr6	15038282	C-T	HOMO	INTERGENIC
SBS	Chr7	29639996	A-G	HET	INTERGENIC
SBS	Chr7	6960099	A-G	HET	INTERGENIC
SBS	Chr9	17385020	T-C	HET	SYNONYMOUS_CODING
SBS	Chr9	17385025	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g28570
SBS	Chr9	19188999	C-T	HET	INTERGENIC
SBS	Chr9	6049250	T-C	HOMO	UTR_5_PRIME
SBS	Chr9	6531282	C-T	HET	INTERGENIC

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	492225	492231	6
Deletion	Chr8	1814024	1814038	14
Deletion	Chr9	2419001	2435000	16000	4
Deletion	Chr8	3239433	3239435	2
Deletion	Chr5	3365510	3365512	2
Deletion	Chr6	7461802	7462591	789
Deletion	Chr6	10319605	10319615	10
Deletion	Chr10	12665841	12665842	1
Deletion	Chr7	13144433	13144444	11
Deletion	Chr3	13931893	13931905	12
Deletion	Chr4	17891709	17891712	3
Deletion	Chr4	20349025	20349043	18
Deletion	Chr6	23321212	23321225	13
Deletion	Chr12	26084484	26084485	1	LOC_Os12g42044
Deletion	Chr2	26167685	26167713	28
Deletion	Chr5	28926059	28926061	2
Deletion	Chr4	31309001	31361000	52000	7
Deletion	Chr4	31356027	31356438	411
Deletion	Chr3	32610001	32632000	22000	4
Deletion	Chr1	42100401	42100405	4

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	12481382	12481382	1
Insertion	Chr12	25900257	25900258	2
Insertion	Chr4	7471318	7471318	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	31309729	31403326	LOC_Os04g52630

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	31355992	Chr3	30514572	LOC_Os03g53190
Translocation	Chr4	31403329	Chr3	30513438

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