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| Mutant Information |
|---|
| Mutant Name | FN-145 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-145 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 28
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 34579444 | G-A | HOMO | INTERGENIC | |
| SBS | Chr1 | 34579445 | C-T | HOMO | INTERGENIC | |
| SBS | Chr1 | 35474909 | G-T | HET | INTERGENIC | |
| SBS | Chr1 | 5650968 | G-A | HOMO | INTERGENIC | |
| SBS | Chr11 | 21026551 | G-A | HET | INTERGENIC | |
| SBS | Chr11 | 21026552 | G-A | HET | INTERGENIC | |
| SBS | Chr12 | 19298616 | C-T | HET | INTERGENIC | |
| SBS | Chr12 | 21288845 | A-G | HET | INTERGENIC | |
| SBS | Chr12 | 25061289 | T-C | HET | INTERGENIC | |
| SBS | Chr2 | 20865429 | A-C | HET | INTERGENIC | |
| SBS | Chr2 | 29018066 | A-T | HET | INTERGENIC | |
| SBS | Chr2 | 5709096 | T-A | HOMO | UTR_3_PRIME | |
| SBS | Chr2 | 9943563 | C-A | HET | INTERGENIC | |
| SBS | Chr3 | 39656 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g01060 |
| SBS | Chr3 | 6939733 | C-T | HET | INTERGENIC | |
| SBS | Chr4 | 16344047 | G-A | HET | INTERGENIC | |
| SBS | Chr4 | 16344048 | T-A | HET | INTERGENIC | |
| SBS | Chr4 | 27742348 | C-G | HET | INTERGENIC | |
| SBS | Chr4 | 3002231 | G-C | HET | INTRON | |
| SBS | Chr5 | 1499902 | A-T | HET | INTERGENIC | |
| SBS | Chr5 | 24468647 | T-C | HET | INTRON | |
| SBS | Chr6 | 22192443 | G-A | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr6 | 22192445 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os06g37500 |
| SBS | Chr6 | 9623544 | C-T | HOMO | INTERGENIC | |
| SBS | Chr7 | 20923497 | C-T | HOMO | INTERGENIC | |
| SBS | Chr8 | 1791463 | G-T | HOMO | INTERGENIC | |
| SBS | Chr8 | 6269574 | G-A | HOMO | INTRON | |
| SBS | Chr9 | 17572960 | A-G | HET | INTERGENIC |
Deletions: 24
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr7 | 8377977 | 8377978 | 1 | |
| Deletion | Chr3 | 9241210 | 9241239 | 29 | |
| Deletion | Chr12 | 11963016 | 11963020 | 4 | LOC_Os12g20470 |
| Deletion | Chr2 | 12369725 | 12369726 | 1 | |
| Deletion | Chr12 | 13273001 | 13341000 | 68000 | 11 |
| Deletion | Chr12 | 13420001 | 13625000 | 205000 | 31 |
| Deletion | Chr9 | 13572824 | 13576437 | 3613 | LOC_Os09g22500 |
| Deletion | Chr4 | 13648657 | 13648660 | 3 | |
| Deletion | Chr9 | 14555636 | 14555637 | 1 | LOC_Os09g24460 |
| Deletion | Chr9 | 15969554 | 15969555 | 1 | |
| Deletion | Chr4 | 16023162 | 16023163 | 1 | |
| Deletion | Chr12 | 17376934 | 17376943 | 9 | |
| Deletion | Chr9 | 17651076 | 17651084 | 8 | |
| Deletion | Chr1 | 18205638 | 18205643 | 5 | LOC_Os01g33090 |
| Deletion | Chr1 | 21304929 | 21304931 | 2 | |
| Deletion | Chr2 | 21423817 | 21423818 | 1 | |
| Deletion | Chr6 | 21662568 | 21662579 | 11 | |
| Deletion | Chr6 | 21934315 | 21934324 | 9 | |
| Deletion | Chr12 | 25296581 | 25296582 | 1 | |
| Deletion | Chr5 | 25829315 | 25829338 | 23 | |
| Deletion | Chr4 | 30395145 | 30395152 | 7 | |
| Deletion | Chr3 | 32629695 | 32630032 | 337 | |
| Deletion | Chr2 | 33136193 | 33136194 | 1 | |
| Deletion | Chr1 | 34579429 | 34579430 | 1 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr3 | 11330959 | 11330959 | 1 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr11 | 20475288 | 21026690 |
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 13273060 | Chr5 | 28982941 | LOC_Os12g23470 |
| Translocation | Chr12 | 13624748 | Chr5 | 28808281 |