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| Mutant Information |
|---|
| Mutant Name | FN-146 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-146 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 21
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 19121911 | A-T | HOMO | INTRON | |
| SBS | Chr1 | 27290597 | A-T | HOMO | INTRON | |
| SBS | Chr10 | 13412403 | C-T | HET | INTERGENIC | |
| SBS | Chr11 | 19931733 | A-G | HET | INTERGENIC | |
| SBS | Chr2 | 17972005 | T-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 10020688 | C-A | HET | INTERGENIC | |
| SBS | Chr3 | 10726486 | T-C | HET | INTERGENIC | |
| SBS | Chr3 | 19810247 | C-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 11425293 | T-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 11430733 | A-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 13295715 | T-C | HET | INTERGENIC | |
| SBS | Chr4 | 34948333 | T-A | HET | INTRON | |
| SBS | Chr5 | 25102562 | C-G | HET | INTERGENIC | |
| SBS | Chr5 | 4846442 | C-T | HET | INTERGENIC | |
| SBS | Chr6 | 10146362 | C-T | HET | INTERGENIC | |
| SBS | Chr6 | 28591269 | C-T | HET | INTERGENIC | |
| SBS | Chr6 | 4047908 | A-T | HET | INTERGENIC | |
| SBS | Chr7 | 15058813 | C-T | HET | INTERGENIC | |
| SBS | Chr7 | 17678758 | T-C | HET | INTERGENIC | |
| SBS | Chr9 | 12291974 | A-C | HET | INTRON | |
| SBS | Chr9 | 19295488 | A-T | HET | INTRON |
Deletions: 28
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 470859 | 470872 | 13 | |
| Deletion | Chr9 | 1206207 | 1206211 | 4 | |
| Deletion | Chr10 | 1424444 | 1424454 | 10 | |
| Deletion | Chr1 | 1659518 | 1789168 | 129650 | 21 |
| Deletion | Chr10 | 4946928 | 4946929 | 1 | |
| Deletion | Chr3 | 5180534 | 5180535 | 1 | |
| Deletion | Chr1 | 6117685 | 6117693 | 8 | LOC_Os01g11370 |
| Deletion | Chr5 | 7998866 | 7998871 | 5 | |
| Deletion | Chr10 | 9072156 | 9072158 | 2 | |
| Deletion | Chr11 | 9393928 | 9394927 | 999 | |
| Deletion | Chr4 | 11425285 | 11425287 | 2 | |
| Deletion | Chr5 | 13883874 | 13883889 | 15 | |
| Deletion | Chr10 | 14033032 | 14033035 | 3 | |
| Deletion | Chr1 | 15356917 | 15356920 | 3 | LOC_Os01g27520 |
| Deletion | Chr9 | 16485513 | 16485561 | 48 | |
| Deletion | Chr6 | 17443258 | 17443262 | 4 | |
| Deletion | Chr2 | 21181913 | 21181928 | 15 | |
| Deletion | Chr2 | 21590001 | 21628000 | 38000 | 5 |
| Deletion | Chr2 | 21915001 | 21929000 | 14000 | 4 |
| Deletion | Chr12 | 22354739 | 22354764 | 25 | |
| Deletion | Chr12 | 23240829 | 23240875 | 46 | |
| Deletion | Chr5 | 24425395 | 24425396 | 1 | |
| Deletion | Chr1 | 27290585 | 27290586 | 1 | |
| Deletion | Chr3 | 29605924 | 29605926 | 2 | LOC_Os03g51690 |
| Deletion | Chr4 | 30888164 | 30888176 | 12 | LOC_Os04g52020 |
| Deletion | Chr1 | 31348215 | 31348218 | 3 | |
| Deletion | Chr1 | 35416669 | 35416672 | 3 | 2 |
| Deletion | Chr3 | 35426643 | 35426645 | 2 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 26649035 | 26649035 | 1 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr1 | 1956038 | 2273145 | LOC_Os01g04910 |
| Inversion | Chr12 | 5040443 | 5696532 | LOC_Os12g09580 |
| Inversion | Chr12 | 5312583 | 5696539 | LOC_Os12g10030 |
| Inversion | Chr2 | 21589876 | 21914565 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 382462 | Chr1 | 20832262 | 2 |
| Translocation | Chr8 | 382498 | Chr1 | 20831570 | 2 |
| Translocation | Chr12 | 24736701 | Chr2 | 21987411 | LOC_Os02g36400 |
| Translocation | Chr12 | 24736707 | Chr2 | 21929071 |