Search Results
| Mutant Information |
|---|
| Mutant Name | FN-148 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-148 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 22
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 15764252 | G-A | HET | INTERGENIC | |
| SBS | Chr1 | 18859958 | C-A | HET | INTERGENIC | |
| SBS | Chr1 | 19895142 | A-G | HET | INTERGENIC | |
| SBS | Chr1 | 31880734 | T-C | HOMO | INTERGENIC | |
| SBS | Chr1 | 36765744 | T-C | HOMO | INTERGENIC | |
| SBS | Chr2 | 14177481 | C-T | HET | INTERGENIC | |
| SBS | Chr2 | 22411208 | A-G | HET | INTRON | |
| SBS | Chr2 | 30370446 | C-T | HET | INTERGENIC | |
| SBS | Chr3 | 5852803 | G-T | HOMO | INTERGENIC | |
| SBS | Chr3 | 23352188 | C-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 6592265 | G-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 11214251 | A-G | HET | INTERGENIC | |
| SBS | Chr4 | 12787850 | C-T | HOMO | INTERGENIC | |
| SBS | Chr5 | 200525 | A-G | HET | INTRON | |
| SBS | Chr5 | 200527 | C-T | HET | INTRON | |
| SBS | Chr5 | 9684195 | C-T | HOMO | INTERGENIC | |
| SBS | Chr5 | 23466547 | T-G | HET | INTERGENIC | |
| SBS | Chr7 | 9371922 | T-C | HOMO | NON_SYNONYMOUS_CODING | LOC_Os07g16070 |
| SBS | Chr8 | 5346066 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os08g09220 |
| SBS | Chr8 | 5887111 | A-C | HOMO | INTRON | |
| SBS | Chr10 | 11619964 | T-C | HET | INTERGENIC | |
| SBS | Chr11 | 2327919 | A-G | HOMO | INTERGENIC |
Deletions: 21
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr7 | 42454 | 42471 | 17 | |
| Deletion | Chr5 | 78938 | 78946 | 8 | LOC_Os05g01060 |
| Deletion | Chr10 | 3217798 | 3217799 | 1 | |
| Deletion | Chr4 | 4045240 | 4045248 | 8 | |
| Deletion | Chr8 | 4116381 | 4116388 | 7 | |
| Deletion | Chr8 | 5346073 | 5346076 | 3 | LOC_Os08g09220 |
| Deletion | Chr5 | 7631001 | 7667000 | 36000 | 5 |
| Deletion | Chr7 | 7645343 | 7645356 | 13 | |
| Deletion | Chr1 | 10589942 | 10589943 | 1 | |
| Deletion | Chr2 | 11571426 | 11571438 | 12 | |
| Deletion | Chr3 | 17103374 | 17103377 | 3 | |
| Deletion | Chr12 | 17699825 | 17699852 | 27 | |
| Deletion | Chr1 | 17760461 | 17760473 | 12 | |
| Deletion | Chr4 | 19122119 | 19122120 | 1 | |
| Deletion | Chr5 | 21776271 | 21776272 | 1 | |
| Deletion | Chr7 | 23624457 | 23624458 | 1 | |
| Deletion | Chr6 | 24698540 | 24698541 | 1 | |
| Deletion | Chr3 | 26576433 | 26576440 | 7 | |
| Deletion | Chr2 | 26773590 | 26773597 | 7 | LOC_Os02g44240 |
| Deletion | Chr2 | 27422104 | 27422109 | 5 | |
| Deletion | Chr1 | 32456536 | 32456537 | 1 | LOC_Os01g56320 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 7412336 | 7412336 | 1 | |
| Insertion | Chr2 | 16613345 | 16613345 | 1 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr8 | 16722223 | 17456271 | LOC_Os08g27400 |
No Translocation