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Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2107632	G-A	HET	SYNONYMOUS_CODING
SBS	Chr1	29749815	A-T	HOMO	INTERGENIC
SBS	Chr1	3887778	T-C	HET	INTRON
SBS	Chr1	5686503	G-T	HET	INTERGENIC
SBS	Chr1	7722852	A-G	HET	INTERGENIC
SBS	Chr10	14089602	A-G	HET	INTERGENIC
SBS	Chr10	15101096	C-G	HOMO	SYNONYMOUS_CODING
SBS	Chr11	15361561	C-G	HET	INTERGENIC
SBS	Chr11	20050670	G-A	HOMO	INTERGENIC
SBS	Chr11	7785196	G-A	HOMO	INTERGENIC
SBS	Chr11	7785197	A-G	HOMO	INTERGENIC
SBS	Chr11	9394917	G-A	HOMO	INTERGENIC
SBS	Chr12	27524481	A-T	HOMO	INTERGENIC
SBS	Chr12	4668678	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g08940
SBS	Chr3	15695146	C-T	HET	INTERGENIC
SBS	Chr3	19826674	T-A	HET	INTERGENIC
SBS	Chr3	25474782	T-C	HET	INTERGENIC
SBS	Chr4	13940734	G-A	HET	INTERGENIC
SBS	Chr4	19663786	G-A	HOMO	INTERGENIC
SBS	Chr4	27355349	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g46180
SBS	Chr5	16629385	A-T	HOMO	INTERGENIC
SBS	Chr5	8670060	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g15290
SBS	Chr6	12556918	T-C	HET	INTERGENIC
SBS	Chr6	16658555	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g29190
SBS	Chr6	16917794	T-A	HET	INTERGENIC
SBS	Chr7	4280835	A-G	HET	INTERGENIC
SBS	Chr8	22309031	T-A	HET	INTERGENIC
SBS	Chr8	5194750	G-A	HOMO	INTERGENIC
SBS	Chr9	5271313	C-T	HET	INTERGENIC

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	4485001	4508000	23000	2
Deletion	Chr7	6661349	6661358	9
Deletion	Chr10	12185639	12185640	1
Deletion	Chr9	16715269	16715276	7
Deletion	Chr4	17702742	17702747	5
Deletion	Chr10	19073883	19073897	14
Deletion	Chr9	21168978	21168979	1
Deletion	Chr9	22287334	22287351	17	LOC_Os09g38790
Deletion	Chr2	23125595	23125599	4
Deletion	Chr2	23515528	23515533	5	LOC_Os02g38900
Deletion	Chr11	24652001	25051000	399000	54
Deletion	Chr11	25075001	25656000	581000	82
Deletion	Chr4	27355427	27355434	7	LOC_Os04g46180
Deletion	Chr4	29049873	29049879	6
Deletion	Chr2	32372040	32372041	1
Deletion	Chr4	32681717	32681736	19

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	2585702	2585704	3
Insertion	Chr5	8610648	8610650	3

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	3082045	3630910	LOC_Os08g05750
Inversion	Chr9	4297900	4508492	LOC_Os09g08310
Inversion	Chr5	10451957	11349782	LOC_Os05g19530

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	3595884	Chr3	1556650	LOC_Os03g03560
Translocation	Chr8	3630897	Chr3	1556664	LOC_Os03g03560
Translocation	Chr5	10448337	Chr4	5058852	LOC_Os05g18180
Translocation	Chr5	11349776	Chr4	4933202	2

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