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Mutant Information

Mutant Name	FN-15 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-15 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 11

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13511670	T-A	Homo	INTERGENIC
SBS	Chr1	20605987	T-C	Homo	INTERGENIC
SBS	Chr2	11378415	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g19470
SBS	Chr2	18388203	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g30840
SBS	Chr4	1862129	A-T	Homo	INTRON
SBS	Chr5	12797453	C-T	Homo	INTERGENIC
SBS	Chr5	24234609	T-C	Homo	UTR_3_PRIME
SBS	Chr7	10065284	C-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os07g17130
SBS	Chr9	16199623	C-G	Homo	INTERGENIC
SBS	Chr9	16250459	C-T	Homo	INTERGENIC
SBS	Chr10	10473553	A-T	Homo	INTERGENIC

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	456606	456610	4	LOC_Os08g01750
Deletion	Chr12	2779418	2779419	1
Deletion	Chr12	2901001	3231000	330000	47
Deletion	Chr5	3619896	3619988	92
Deletion	Chr10	10284108	10284109	1
Deletion	Chr5	13184371	13185111	740
Deletion	Chr6	17837732	17837733	1
Deletion	Chr5	21032074	21032090	16
Deletion	Chr9	22516051	22516061	10	LOC_Os09g39200
Deletion	Chr4	24365173	24365176	3
Deletion	Chr2	27091664	27091674	10
Deletion	Chr2	29272044	29272072	28
Deletion	Chr3	31082598	31140061	57463	7
Deletion	Chr3	33738798	33738821	23	LOC_Os03g59250

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr7	28354245	28354246	2
Insertion	Chr2	33662626	33662626	1
Insertion	Chr9	11831239	11831239	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	32091512	32290205	LOC_Os02g52810
Inversion	Chr3	34119755	34509129	LOC_Os03g60720

No Translocation