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| Mutant Information |
|---|
| Mutant Name | FN-150 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-150 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 24
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 17468128 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os01g31880 |
| SBS | Chr1 | 34600620 | C-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr11 | 25521387 | A-G | HOMO | INTERGENIC | |
| SBS | Chr11 | 26651605 | G-T | HOMO | INTERGENIC | |
| SBS | Chr11 | 9017188 | G-A | HET | INTERGENIC | |
| SBS | Chr12 | 10362017 | A-C | HOMO | INTRON | |
| SBS | Chr12 | 10926371 | G-A | HOMO | INTERGENIC | |
| SBS | Chr12 | 18714102 | C-T | HOMO | INTERGENIC | |
| SBS | Chr12 | 21791073 | A-T | HOMO | INTERGENIC | |
| SBS | Chr12 | 21791074 | G-T | HOMO | INTERGENIC | |
| SBS | Chr2 | 2837182 | A-T | HET | INTERGENIC | |
| SBS | Chr2 | 3520128 | A-T | HET | INTERGENIC | |
| SBS | Chr3 | 895215 | A-G | HET | INTERGENIC | |
| SBS | Chr3 | 895216 | A-T | HET | INTERGENIC | |
| SBS | Chr5 | 19588143 | C-T | HOMO | INTERGENIC | |
| SBS | Chr6 | 20732496 | A-G | HOMO | INTERGENIC | |
| SBS | Chr6 | 24263582 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os06g40700 |
| SBS | Chr6 | 2597020 | G-A | HET | INTERGENIC | |
| SBS | Chr6 | 28773170 | C-A | HET | INTRON | |
| SBS | Chr6 | 5656539 | A-G | HET | INTERGENIC | |
| SBS | Chr8 | 4574039 | T-A | HOMO | INTRON | |
| SBS | Chr9 | 12256168 | A-G | HET | INTERGENIC | |
| SBS | Chr9 | 19034809 | T-G | HET | INTERGENIC | |
| SBS | Chr9 | 21991105 | G-A | HOMO | INTERGENIC |
Deletions: 15
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 1536046 | 1536055 | 9 | |
| Deletion | Chr9 | 2035043 | 2035067 | 24 | |
| Deletion | Chr7 | 5806810 | 5806814 | 4 | |
| Deletion | Chr11 | 10603510 | 10603511 | 1 | |
| Deletion | Chr6 | 13950077 | 13950078 | 1 | |
| Deletion | Chr5 | 14022477 | 14022486 | 9 | LOC_Os05g24240 |
| Deletion | Chr4 | 17324874 | 17324876 | 2 | |
| Deletion | Chr7 | 19744781 | 19744782 | 1 | |
| Deletion | Chr6 | 19790749 | 19790750 | 1 | |
| Deletion | Chr4 | 20564678 | 20564683 | 5 | LOC_Os04g33970 |
| Deletion | Chr2 | 22261631 | 22261632 | 1 | |
| Deletion | Chr1 | 24303989 | 24304000 | 11 | |
| Deletion | Chr7 | 26939690 | 26939698 | 8 | |
| Deletion | Chr2 | 28247576 | 28247579 | 3 | LOC_Os02g46340 |
| Deletion | Chr7 | 28297569 | 28297570 | 1 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr2 | 34860967 | 34860967 | 1 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr9 | 12039368 | 12043138 | |
| Inversion | Chr9 | 12042206 | 12043146 |
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 6529610 | Chr6 | 6977016 | LOC_Os10g11794 |
| Translocation | Chr11 | 24904376 | Chr7 | 19179240 |