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| Mutant Information |
|---|
| Mutant Name | FN-151 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-151 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 28
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 12820780 | G-C | HET | INTERGENIC | |
| SBS | Chr1 | 41050048 | C-T | HET | INTERGENIC | |
| SBS | Chr1 | 4169727 | T-G | HET | INTRON | |
| SBS | Chr10 | 12235281 | T-A | HOMO | INTERGENIC | |
| SBS | Chr10 | 14277029 | C-T | HET | INTERGENIC | |
| SBS | Chr10 | 14277030 | C-T | HET | INTERGENIC | |
| SBS | Chr10 | 427551 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os10g01640 |
| SBS | Chr12 | 10346588 | A-T | HET | INTERGENIC | |
| SBS | Chr12 | 16371819 | T-A | HOMO | INTRON | |
| SBS | Chr12 | 16569602 | A-G | HOMO | INTERGENIC | |
| SBS | Chr12 | 8405745 | C-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr12 | 8405746 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g14680 |
| SBS | Chr2 | 24206445 | G-A | HET | INTERGENIC | |
| SBS | Chr3 | 7969671 | G-C | HET | INTERGENIC | |
| SBS | Chr4 | 10315771 | G-A | HET | INTERGENIC | |
| SBS | Chr4 | 21639815 | T-C | HET | INTRON | |
| SBS | Chr5 | 18840949 | C-T | HET | INTERGENIC | |
| SBS | Chr5 | 21457522 | C-A | HET | INTERGENIC | |
| SBS | Chr5 | 22531121 | C-T | HOMO | INTERGENIC | |
| SBS | Chr7 | 13770505 | T-A | HET | INTRON | |
| SBS | Chr7 | 1588298 | A-C | HET | INTERGENIC | |
| SBS | Chr7 | 21582576 | A-C | HOMO | INTERGENIC | |
| SBS | Chr7 | 27193591 | G-A | HET | INTERGENIC | |
| SBS | Chr7 | 6122227 | C-T | HET | INTERGENIC | |
| SBS | Chr8 | 25712684 | T-C | HET | INTERGENIC | |
| SBS | Chr9 | 13754419 | G-A | HET | INTERGENIC | |
| SBS | Chr9 | 14646587 | G-A | HET | INTERGENIC | |
| SBS | Chr9 | 6332267 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os09g11380 |
Deletions: 18
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 2408825 | 2408826 | 1 | |
| Deletion | Chr10 | 6188743 | 6188759 | 16 | |
| Deletion | Chr9 | 9288405 | 9288427 | 22 | |
| Deletion | Chr5 | 10021001 | 10047000 | 26000 | 3 |
| Deletion | Chr5 | 10058001 | 10515000 | 457000 | 72 |
| Deletion | Chr3 | 11221702 | 11224458 | 2756 | |
| Deletion | Chr6 | 14606073 | 14606090 | 17 | |
| Deletion | Chr12 | 15885267 | 15885280 | 13 | |
| Deletion | Chr11 | 16761346 | 16761356 | 10 | |
| Deletion | Chr6 | 18015595 | 18015601 | 6 | LOC_Os06g30970 |
| Deletion | Chr11 | 19644780 | 19644781 | 1 | LOC_Os11g33220 |
| Deletion | Chr7 | 20879014 | 20879015 | 1 | |
| Deletion | Chr12 | 22421004 | 22421013 | 9 | |
| Deletion | Chr11 | 24171886 | 24171887 | 1 | |
| Deletion | Chr3 | 26031689 | 26031700 | 11 | |
| Deletion | Chr7 | 26902186 | 26902192 | 6 | LOC_Os07g45074 |
| Deletion | Chr6 | 30518988 | 30519007 | 19 | |
| Deletion | Chr3 | 31132567 | 31132570 | 3 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 16367368 | 16367369 | 2 | |
| Insertion | Chr3 | 12521450 | 12521450 | 1 |
No Inversion
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 6425738 | Chr2 | 27083202 | 2 |
| Translocation | Chr5 | 9200210 | Chr2 | 27083623 | |
| Translocation | Chr10 | 22725553 | Chr2 | 28866259 | LOC_Os02g47280 |
| Translocation | Chr10 | 22725586 | Chr2 | 28868960 |