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Mutant Information

Variant Information

Single base substitutions: 22

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14170023	C-A	HET	INTERGENIC
SBS	Chr1	19216333	G-A	HOMO	INTERGENIC
SBS	Chr1	23332079	G-A	HOMO	INTERGENIC
SBS	Chr2	1885740	A-C	HET	SYNONYMOUS_CODING
SBS	Chr2	24707425	A-G	HET	INTERGENIC
SBS	Chr2	26304188	T-G	HET	INTERGENIC
SBS	Chr3	2170670	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g04630
SBS	Chr3	16246022	T-G	HOMO	INTERGENIC
SBS	Chr3	30360842	G-A	HET	INTERGENIC
SBS	Chr5	6769466	T-G	HET	INTERGENIC
SBS	Chr5	7167061	C-T	HET	INTRON
SBS	Chr7	10673799	C-T	HET	INTRON
SBS	Chr8	8807498	C-T	HOMO	INTERGENIC
SBS	Chr9	2704495	T-C	HET	INTRON
SBS	Chr9	5824179	G-A	HET	STOP_GAINED	LOC_Os09g10680
SBS	Chr10	1846026	G-A	HET	INTERGENIC
SBS	Chr10	4719649	G-T	HET	STOP_GAINED	LOC_Os10g08702
SBS	Chr10	19691537	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g36780
SBS	Chr11	17689890	G-A	HOMO	INTERGENIC
SBS	Chr11	20782752	T-G	HET	INTERGENIC
SBS	Chr11	26830632	C-T	HET	INTERGENIC
SBS	Chr12	9877549	G-A	HET	INTERGENIC

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	1062757	1062758	1
Deletion	Chr6	4128046	4128056	10
Deletion	Chr5	7165334	7165337	3
Deletion	Chr7	7227710	7227716	6
Deletion	Chr8	8320685	8320686	1
Deletion	Chr11	13059001	13131000	72000	14
Deletion	Chr5	13283328	13283330	2
Deletion	Chr10	14827952	14827970	18
Deletion	Chr3	14906361	14906370	9	LOC_Os03g26000
Deletion	Chr9	17366705	17366709	4	LOC_Os09g28560
Deletion	Chr8	18739146	18739149	3
Deletion	Chr4	18928918	18928922	4
Deletion	Chr1	22569619	22569621	2	LOC_Os01g40010
Deletion	Chr11	23844578	23844580	2
Deletion	Chr3	25073103	25073120	17
Deletion	Chr4	29827525	29827536	11
Deletion	Chr1	32752597	32752598	1

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	3075756	3075756	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	18655957	19835994
Inversion	Chr2	18655978	19836001

No Translocation

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