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Mutant Information

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6865394	G-A	HOMO	INTERGENIC
SBS	Chr1	6865395	G-A	HOMO	INTERGENIC
SBS	Chr1	15519880	C-G	HOMO	SYNONYMOUS_CODING
SBS	Chr1	21547456	C-A	HET	INTRON
SBS	Chr1	41781667	G-A	HET	UTR_3_PRIME
SBS	Chr2	5620982	A-T	HET	INTERGENIC
SBS	Chr3	19231519	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g33640
SBS	Chr3	24324897	G-A	HET	INTERGENIC
SBS	Chr3	33127137	C-A	HET	INTERGENIC
SBS	Chr4	10072709	A-G	HOMO	INTERGENIC
SBS	Chr4	33802958	T-C	HET	INTERGENIC
SBS	Chr5	6519464	T-A	HET	INTERGENIC
SBS	Chr5	29687087	G-A	HET	INTERGENIC
SBS	Chr6	12318935	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g21330
SBS	Chr6	23952843	G-A	HET	INTERGENIC
SBS	Chr6	24101391	C-G	HOMO	INTERGENIC
SBS	Chr6	25706236	A-T	HOMO	INTERGENIC
SBS	Chr7	217180	C-T	HET	INTRON
SBS	Chr7	836258	C-T	HOMO	INTERGENIC
SBS	Chr7	7219100	T-C	HOMO	INTERGENIC
SBS	Chr7	18413192	C-T	HOMO	INTRON
SBS	Chr7	18984209	A-T	HOMO	INTERGENIC
SBS	Chr7	23959451	G-A	HOMO	INTERGENIC
SBS	Chr8	15276187	T-C	HOMO	INTRON
SBS	Chr8	15284312	G-A	HOMO	INTERGENIC
SBS	Chr8	17156819	C-T	HET	INTERGENIC
SBS	Chr8	21584768	G-C	HET	INTERGENIC
SBS	Chr9	14817035	T-G	HET	INTERGENIC
SBS	Chr11	1902322	G-A	HET	INTRON
SBS	Chr11	11192834	A-C	HET	INTRON
SBS	Chr11	15917110	G-A	HET	INTERGENIC
SBS	Chr12	8127530	T-C	HET	INTERGENIC

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	408001	421000	13000	LOC_Os08g01700
Deletion	Chr9	9200505	9200508	3
Deletion	Chr1	12053337	12053339	2
Deletion	Chr10	12878823	12878843	20
Deletion	Chr5	13273591	13273607	16	LOC_Os05g23250
Deletion	Chr1	18418816	18418818	2
Deletion	Chr7	26632342	26632350	8
Deletion	Chr7	27491486	27491489	3
Deletion	Chr1	32538001	32719000	181000	24
Deletion	Chr1	34087529	34087534	5
Deletion	Chr1	39928440	39928455	15
Deletion	Chr1	41781984	41781986	2
Deletion	Chr1	41883874	41883895	21

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr6	23818821	23818821	1

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	407674	642577	LOC_Os08g02000
Inversion	Chr8	421034	642585	LOC_Os08g02000
Inversion	Chr4	10120926	10553321	2
Inversion	Chr5	14293323	14587658
Inversion	Chr5	14293360	14587672
Inversion	Chr7	26460040	26816707	LOC_Os07g44960
Inversion	Chr7	26816712	27483863	LOC_Os07g44960

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	2519108	Chr2	3372404
Translocation	Chr7	17026139	Chr2	3372421	LOC_Os07g29030

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