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| Mutant Information |
|---|
| Mutant Name | FN-154 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-154 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 29
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 17241204 | T-G | HET | INTERGENIC | |
| SBS | Chr10 | 14953889 | C-T | HET | INTERGENIC | |
| SBS | Chr10 | 3071012 | T-G | HET | INTERGENIC | |
| SBS | Chr12 | 15613360 | A-G | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr2 | 16312423 | C-T | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr3 | 2101818 | T-G | HET | UTR_3_PRIME | |
| SBS | Chr3 | 22329378 | T-C | HOMO | INTERGENIC | |
| SBS | Chr4 | 8054483 | G-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr5 | 11900675 | T-C | HOMO | INTERGENIC | |
| SBS | Chr5 | 2168071 | T-C | HOMO | INTERGENIC | |
| SBS | Chr6 | 13509665 | T-G | HET | INTERGENIC | |
| SBS | Chr6 | 21571749 | C-T | HET | INTERGENIC | |
| SBS | Chr6 | 29649664 | A-G | HET | INTERGENIC | |
| SBS | Chr6 | 733556 | G-A | HOMO | INTERGENIC | |
| SBS | Chr6 | 7928028 | C-T | HET | INTERGENIC | |
| SBS | Chr7 | 10965631 | G-A | HOMO | INTRON | |
| SBS | Chr7 | 20044810 | C-A | HET | INTERGENIC | |
| SBS | Chr7 | 20186579 | G-A | HET | STOP_GAINED | LOC_Os07g33760 |
| SBS | Chr7 | 20354895 | T-C | HET | INTERGENIC | |
| SBS | Chr7 | 20922025 | A-G | HET | INTERGENIC | |
| SBS | Chr7 | 7844806 | C-T | HOMO | INTERGENIC | |
| SBS | Chr8 | 2806744 | A-C | HET | INTERGENIC | |
| SBS | Chr8 | 9640254 | G-A | HET | INTERGENIC | |
| SBS | Chr9 | 16010608 | C-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr9 | 19712123 | A-C | HET | NON_SYNONYMOUS_CODING | LOC_Os09g33460 |
| SBS | Chr9 | 19712124 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os09g33460 |
| SBS | Chr9 | 20456306 | A-C | HET | INTERGENIC | |
| SBS | Chr9 | 7010494 | A-T | HET | INTERGENIC | |
| SBS | Chr9 | 7301809 | T-G | HET | INTERGENIC |
Deletions: 16
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 1576001 | 1689000 | 113000 | 15 |
| Deletion | Chr3 | 1956205 | 1956206 | 1 | |
| Deletion | Chr6 | 4757834 | 4757840 | 6 | |
| Deletion | Chr5 | 4772555 | 4772557 | 2 | |
| Deletion | Chr4 | 5671722 | 5671723 | 1 | |
| Deletion | Chr3 | 11145053 | 11145056 | 3 | |
| Deletion | Chr4 | 11414082 | 11414104 | 22 | |
| Deletion | Chr2 | 12447295 | 12447303 | 8 | LOC_Os02g21009 |
| Deletion | Chr9 | 18000001 | 18101000 | 101000 | 18 |
| Deletion | Chr12 | 19226100 | 19226107 | 7 | |
| Deletion | Chr7 | 20044813 | 20044814 | 1 | |
| Deletion | Chr12 | 20827807 | 20827829 | 22 | |
| Deletion | Chr7 | 23528220 | 23528225 | 5 | |
| Deletion | Chr2 | 29579112 | 29579118 | 6 | |
| Deletion | Chr2 | 32625316 | 32625318 | 2 | |
| Deletion | Chr4 | 34837180 | 34837190 | 10 | LOC_Os04g58590 |
No Insertion
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr8 | 10003795 | 12089165 | LOC_Os08g20170 |
| Inversion | Chr10 | 13897513 | 14058101 | LOC_Os10g26630 |
| Inversion | Chr9 | 17691345 | 18100783 | |
| Inversion | Chr1 | 28509083 | 29152427 |
Translocations: 1
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr2 | 23219832 | Chr1 | 18423886 | LOC_Os02g38392 |