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Mutant Information

Variant Information

Single base substitutions: 37

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	35074865	A-T	HOMO	INTERGENIC
SBS	Chr1	36282701	T-A	HOMO	INTRON
SBS	Chr2	6010558	T-C	HOMO	INTERGENIC
SBS	Chr2	10173541	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g17670
SBS	Chr2	11839228	G-A	HET	INTRON
SBS	Chr2	20417064	A-T	HET	INTERGENIC
SBS	Chr2	20417065	C-T	HET	INTERGENIC
SBS	Chr2	25253082	A-G	HET	INTRON
SBS	Chr3	6097246	G-T	HET	INTERGENIC
SBS	Chr3	20113392	T-C	HOMO	INTERGENIC
SBS	Chr3	20113393	C-A	HOMO	INTERGENIC
SBS	Chr3	20352296	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr3	27995213	T-A	HET	INTERGENIC
SBS	Chr3	34659896	C-A	HET	INTERGENIC
SBS	Chr4	607417	A-T	HET	INTRON
SBS	Chr4	5722305	A-C	HET	INTERGENIC
SBS	Chr4	14189463	G-C	HOMO	INTERGENIC
SBS	Chr4	15343926	C-T	HET	INTRON
SBS	Chr4	23624265	G-T	HOMO	INTERGENIC
SBS	Chr4	29826415	G-T	HET	INTERGENIC
SBS	Chr5	7296695	C-T	HET	INTERGENIC
SBS	Chr5	11072922	A-G	HET	INTERGENIC
SBS	Chr5	16615669	A-T	HET	INTERGENIC
SBS	Chr6	5166088	A-G	HET	INTERGENIC
SBS	Chr6	8241095	C-T	HET	INTERGENIC
SBS	Chr8	5415538	G-T	HET	INTERGENIC
SBS	Chr8	6762161	C-T	HET	SYNONYMOUS_CODING
SBS	Chr9	12762141	C-T	HET	INTRON
SBS	Chr10	7293014	G-A	HET	INTRON
SBS	Chr10	15435093	G-T	HET	INTERGENIC
SBS	Chr10	16567386	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g31620
SBS	Chr10	20489975	G-C	HET	INTERGENIC
SBS	Chr10	21843523	C-A	HOMO	INTERGENIC
SBS	Chr11	224132	G-C	HET	INTERGENIC
SBS	Chr11	224136	G-A	HET	INTERGENIC
SBS	Chr11	11171187	C-T	HOMO	INTERGENIC
SBS	Chr11	28517235	C-T	HET	INTERGENIC

Deletions: 33

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	255578	255580	2
Deletion	Chr7	1154989	1155008	19	LOC_Os07g03040
Deletion	Chr2	2448951	2448960	9
Deletion	Chr4	5821331	5821332	1	LOC_Os04g10700
Deletion	Chr3	5883137	5883151	14	LOC_Os03g11420
Deletion	Chr9	8302445	8302449	4	LOC_Os09g14040
Deletion	Chr1	9237849	9237850	1
Deletion	Chr7	9304260	9304266	6
Deletion	Chr9	9984138	9984145	7
Deletion	Chr6	11287964	11287968	4
Deletion	Chr2	11729433	11729468	35
Deletion	Chr12	11859337	11859356	19
Deletion	Chr11	12005289	12005300	11
Deletion	Chr5	13023435	13023436	1
Deletion	Chr5	13243779	13243799	20
Deletion	Chr10	14088668	14088679	11
Deletion	Chr7	14292449	14292453	4
Deletion	Chr9	17333551	17333553	2
Deletion	Chr7	17506221	17506224	3	LOC_Os07g29780
Deletion	Chr5	18706226	18706251	25
Deletion	Chr10	19262534	19262562	28	LOC_Os10g36050
Deletion	Chr10	22640099	22640106	7	LOC_Os10g42090
Deletion	Chr3	23033564	23033603	39
Deletion	Chr1	23065526	23065536	10
Deletion	Chr2	23188743	23188744	1
Deletion	Chr4	25181514	25181578	64
Deletion	Chr2	26124054	26124073	19
Deletion	Chr1	28179610	28179611	1
Deletion	Chr2	28443586	28443588	2
Deletion	Chr3	30819504	30897069	77565	10
Deletion	Chr4	31013123	31013133	10
Deletion	Chr2	33032078	33032080	2
Deletion	Chr4	33510984	33511006	22

Insertions: 31

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	11333763	11333763	1	LOC_Os10g21950
Insertion	Chr1	23440791	23440808	18
Insertion	Chr12	24620953	24620970	18
Insertion	Chr11	2965879	2965890	12
Insertion	Chr4	32447022	32447033	12
Insertion	Chr3	25828609	25828616	8
Insertion	Chr1	2205708	2205711	4
Insertion	Chr11	18804838	18804841	4
Insertion	Chr2	14500268	14500271	4
Insertion	Chr2	19388049	19388052	4
Insertion	Chr2	25125213	25125216	4
Insertion	Chr3	23671316	23671319	4
Insertion	Chr3	25891065	25891068	4
Insertion	Chr6	7465993	7465996	4
Insertion	Chr7	11785252	11785255	4
Insertion	Chr11	7192664	7192666	3
Insertion	Chr2	5449446	5449448	3
Insertion	Chr2	26690815	26690817	3	LOC_Os02g44130
Insertion	Chr4	3630733	3630735	3
Insertion	Chr4	31490833	31490835	3
Insertion	Chr7	12793853	12793855	3
Insertion	Chr1	23593027	23593028	2
Insertion	Chr1	40469277	40469278	2
Insertion	Chr11	4878367	4878368	2
Insertion	Chr2	16516655	16516656	2
Insertion	Chr8	7897254	7897255	2
Insertion	Chr8	24124414	24124415	2
Insertion	Chr11	2822917	2822917	1
Insertion	Chr3	6846910	6846910	1
Insertion	Chr5	1761684	1761684	1
Insertion	Chr8	11533183	11533183	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	10797574	11403310
Inversion	Chr3	30819713	31361552	LOC_Os03g53760
Inversion	Chr3	30896857	31361544	LOC_Os03g53880

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	7837524	Chr4	18954116

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