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Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22665269	C-T	HET	INTERGENIC
SBS	Chr1	27206905	T-A	HET	INTERGENIC
SBS	Chr1	33446938	C-A	HET	INTERGENIC
SBS	Chr1	33446939	G-A	HET	INTERGENIC
SBS	Chr1	42779111	G-A	HET	INTERGENIC
SBS	Chr2	837286	T-A	HET	INTERGENIC
SBS	Chr2	7820713	G-T	HET	INTERGENIC
SBS	Chr2	11863537	G-A	HET	INTRON
SBS	Chr3	15490187	G-A	HOMO	INTERGENIC
SBS	Chr3	26301818	A-T	HOMO	INTERGENIC
SBS	Chr4	2115019	G-T	HET	INTERGENIC
SBS	Chr4	16135742	A-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g27310
SBS	Chr4	21460082	A-G	HOMO	INTERGENIC
SBS	Chr4	27086898	C-T	HET	INTERGENIC
SBS	Chr4	31585876	C-T	HET	INTERGENIC
SBS	Chr5	5296349	A-G	HET	INTRON
SBS	Chr5	7504978	C-T	HET	INTERGENIC
SBS	Chr5	19292856	T-C	HOMO	INTRON
SBS	Chr6	7163809	C-T	HOMO	INTRON
SBS	Chr7	7614273	G-A	HET	INTERGENIC
SBS	Chr7	8563563	A-G	HET	SYNONYMOUS_CODING
SBS	Chr7	19468438	G-A	HET	INTERGENIC
SBS	Chr7	21776185	C-A	HET	INTERGENIC
SBS	Chr8	4960332	T-G	HET	INTRON
SBS	Chr8	12107257	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g20180
SBS	Chr9	15498366	C-T	HET	INTERGENIC
SBS	Chr9	15720519	C-T	HOMO	INTERGENIC
SBS	Chr10	692199	A-C	HET	INTRON
SBS	Chr10	5433969	G-C	HET	INTERGENIC
SBS	Chr10	11090118	T-C	HOMO	UTR_3_PRIME
SBS	Chr11	5858288	G-A	HET	INTERGENIC
SBS	Chr11	9755885	G-A	HOMO	INTRON
SBS	Chr11	13302835	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g23110
SBS	Chr11	18838613	G-A	HET	INTERGENIC
SBS	Chr12	14533888	G-A	HET	INTERGENIC

Deletions: 40

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	2182909	2182910	1
Deletion	Chr10	3603929	3603930	1
Deletion	Chr7	3831835	3831842	7
Deletion	Chr3	4005635	4005659	24
Deletion	Chr5	4806424	4806425	1
Deletion	Chr12	5463201	5463202	1
Deletion	Chr6	6054161	6054162	1
Deletion	Chr5	6072765	6072766	1
Deletion	Chr3	6092316	6092332	16
Deletion	Chr5	6601102	6601105	3
Deletion	Chr6	7347183	7347184	1
Deletion	Chr7	7614274	7614275	1
Deletion	Chr3	7785876	7785880	4
Deletion	Chr6	8397673	8397685	12	LOC_Os06g14800
Deletion	Chr7	8537976	8537978	2	LOC_Os07g14920
Deletion	Chr2	8714422	8714424	2	LOC_Os02g15540
Deletion	Chr7	8885498	8885501	3
Deletion	Chr12	9753416	9753421	5
Deletion	Chr3	10487983	10487984	1
Deletion	Chr2	10756465	10756549	84
Deletion	Chr2	11047247	11047248	1
Deletion	Chr9	11348793	11348802	9
Deletion	Chr8	12707690	12707692	2
Deletion	Chr10	17856273	17856274	1
Deletion	Chr10	18105662	18105677	15
Deletion	Chr8	18755066	18755074	8
Deletion	Chr10	19337384	19337385	1
Deletion	Chr10	20720846	20720856	10	LOC_Os10g38890
Deletion	Chr12	21174277	21174280	3
Deletion	Chr6	21420484	21420495	11
Deletion	Chr11	21893345	21893350	5	LOC_Os11g37090
Deletion	Chr11	23449937	23449940	3
Deletion	Chr11	25105869	25106946	1077	LOC_Os11g41780
Deletion	Chr11	25215837	25215938	101
Deletion	Chr3	26736030	26736036	6
Deletion	Chr5	28071539	28071540	1
Deletion	Chr1	28476995	28476999	4	LOC_Os01g49500
Deletion	Chr1	32608173	32608189	16
Deletion	Chr3	33142329	33142330	1
Deletion	Chr4	34592241	34592244	3

Insertions: 40

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr4	19379274	19379274	1
Insertion	Chr10	15018854	15018913	60
Insertion	Chr8	4309379	4309411	33
Insertion	Chr7	11005952	11005976	25
Insertion	Chr2	9555651	9555671	21	LOC_Os02g16740
Insertion	Chr2	12409833	12409850	18
Insertion	Chr1	38599018	38599033	16
Insertion	Chr2	16811940	16811954	15
Insertion	Chr3	20439094	20439107	14
Insertion	Chr7	9981329	9981342	14
Insertion	Chr1	23724164	23724173	10
Insertion	Chr12	25556821	25556828	8
Insertion	Chr1	4967446	4967451	6
Insertion	Chr7	23100486	23100491	6
Insertion	Chr11	22223380	22223383	4
Insertion	Chr9	10350505	10350508	4
Insertion	Chr2	15568946	15568948	3
Insertion	Chr6	23545576	23545578	3
Insertion	Chr8	19775673	19775675	3	LOC_Os08g31910
Insertion	Chr9	15134259	15134261	3
Insertion	Chr1	27782763	27782764	2
Insertion	Chr10	17559878	17559879	2
Insertion	Chr10	21194276	21194277	2
Insertion	Chr11	3548793	3548794	2	LOC_Os11g07124
Insertion	Chr11	27699077	27699078	2
Insertion	Chr2	18534196	18534197	2
Insertion	Chr2	28081723	28081724	2	LOC_Os02g46080
Insertion	Chr4	19644590	19644591	2
Insertion	Chr4	31505595	31505596	2
Insertion	Chr5	14140444	14140445	2
Insertion	Chr7	25221115	25221116	2
Insertion	Chr8	1285970	1285971	2
Insertion	Chr8	16394544	16394545	2
Insertion	Chr8	17539706	17539707	2
Insertion	Chr9	7340566	7340567	2
Insertion	Chr9	15169579	15169580	2
Insertion	Chr11	17054305	17054305	1
Insertion	Chr2	14697465	14697465	1
Insertion	Chr6	22092940	22092940	1
Insertion	Chr9	6166383	6166383	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	8866259	13124599	LOC_Os07g23290
Inversion	Chr3	13238408	13599831	LOC_Os03g22900

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	15495015	Chr7	13124611	2
Translocation	Chr9	15499836	Chr7	8866270	LOC_Os09g25860

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