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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25318253	C-T	HET	INTRON
SBS	Chr1	25318255	C-T	HET	INTRON
SBS	Chr1	34141808	G-T	HET	UTR_5_PRIME
SBS	Chr10	13044151	A-T	HET	INTRON
SBS	Chr10	16498345	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g31490
SBS	Chr10	6965086	G-C	HET	INTERGENIC
SBS	Chr10	6965090	G-A	HET	INTERGENIC
SBS	Chr11	11164030	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g19420
SBS	Chr11	1627335	G-C	HOMO	INTRON
SBS	Chr11	16694098	G-T	HET	INTERGENIC
SBS	Chr11	21457728	T-C	HET	INTERGENIC
SBS	Chr12	19320037	G-T	HET	INTRON
SBS	Chr2	31384295	G-A	HOMO	INTERGENIC
SBS	Chr2	4690683	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g09140
SBS	Chr2	4690684	C-T	HET	SYNONYMOUS_CODING
SBS	Chr3	16291197	C-A	HOMO	INTERGENIC
SBS	Chr3	25522233	T-C	HOMO	INTRON
SBS	Chr3	28576706	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g50100
SBS	Chr3	5395008	T-A	HOMO	INTRON
SBS	Chr4	16937916	C-T	HET	INTERGENIC
SBS	Chr4	16937919	A-G	HET	INTERGENIC
SBS	Chr4	7155182	G-A	HET	SYNONYMOUS_CODING
SBS	Chr5	15700812	T-C	HET	INTRON
SBS	Chr5	4928345	A-C	HET	INTERGENIC
SBS	Chr5	4928346	G-T	HET	INTERGENIC
SBS	Chr6	13009089	C-T	HOMO	INTERGENIC
SBS	Chr6	13009090	G-T	HOMO	INTERGENIC
SBS	Chr6	13009101	G-T	HOMO	INTERGENIC
SBS	Chr6	24628773	T-A	HET	INTERGENIC
SBS	Chr7	6568296	A-T	HET	INTERGENIC
SBS	Chr8	22811119	C-T	HOMO	INTRON

Deletions: 39

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	153783	153804	21
Deletion	Chr6	1827978	1827981	3
Deletion	Chr5	2466550	2466551	1
Deletion	Chr12	3393267	3393269	2
Deletion	Chr8	3521455	3521459	4
Deletion	Chr2	3566437	3566444	7
Deletion	Chr10	4488934	4502811	13877	LOC_Os10g08319
Deletion	Chr8	4646147	4646149	2
Deletion	Chr5	4727159	4727173	14
Deletion	Chr5	5355450	5355453	3
Deletion	Chr6	5641531	5641534	3	LOC_Os06g10810
Deletion	Chr2	6070149	6070161	12	LOC_Os02g11760
Deletion	Chr1	6091987	6091988	1
Deletion	Chr7	6558114	6566590	8476	LOC_Os07g11860
Deletion	Chr9	7136535	7136537	2
Deletion	Chr1	7736457	7738044	1587
Deletion	Chr4	8081648	8091967	10319	2
Deletion	Chr8	9486017	9910434	424417	61
Deletion	Chr8	10307829	10307831	2
Deletion	Chr11	11797777	11797821	44
Deletion	Chr6	13009119	13009180	61
Deletion	Chr1	13703565	13703566	1
Deletion	Chr11	16526616	16526636	20
Deletion	Chr11	17969977	17969983	6
Deletion	Chr12	18334340	18334341	1
Deletion	Chr11	19141758	19145606	3848	LOC_Os11g32420
Deletion	Chr12	19367047	19367049	2
Deletion	Chr11	19424556	19468842	44286	7
Deletion	Chr9	20958074	20958078	4
Deletion	Chr9	21483539	21483541	2
Deletion	Chr4	24329934	24329935	1
Deletion	Chr8	24570173	24570193	20
Deletion	Chr4	25247129	25247143	14
Deletion	Chr5	26723302	26723307	5
Deletion	Chr5	27469835	27469838	3	LOC_Os05g47920
Deletion	Chr3	27719042	27719052	10
Deletion	Chr5	28834071	28834085	14
Deletion	Chr2	29739221	29739256	35
Deletion	Chr4	30376002	30376003	1

Insertions: 32

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	11739696	11739699	4
Insertion	Chr1	21011469	21011472	4
Insertion	Chr1	2743564	2743566	3
Insertion	Chr1	3105924	3105926	3
Insertion	Chr1	4915293	4915294	2
Insertion	Chr1	4926434	4926455	22
Insertion	Chr1	5369281	5369282	2
Insertion	Chr1	6674737	6674742	6
Insertion	Chr10	1742093	1742096	4
Insertion	Chr11	12653359	12653360	2
Insertion	Chr11	22840117	22840118	2
Insertion	Chr11	26216523	26216524	2
Insertion	Chr11	28824595	28824596	2
Insertion	Chr11	28964957	28964958	2	LOC_Os11g48040
Insertion	Chr11	3710388	3710389	2
Insertion	Chr11	871553	871554	2
Insertion	Chr12	10248205	10248208	4
Insertion	Chr12	26180459	26180459	1
Insertion	Chr12	9576250	9576250	1	LOC_Os12g16710
Insertion	Chr2	24075758	24075758	1
Insertion	Chr2	4070747	4070747	1
Insertion	Chr4	25220774	25220774	1
Insertion	Chr5	18819294	18819294	1
Insertion	Chr6	24037839	24037842	4
Insertion	Chr6	27413293	27413308	16	LOC_Os06g45350
Insertion	Chr7	10920496	10920497	2
Insertion	Chr7	1186731	1186740	10
Insertion	Chr7	4124573	4124574	2
Insertion	Chr7	6485200	6485200	1
Insertion	Chr8	10779950	10779950	1
Insertion	Chr8	14982004	14982004	1
Insertion	Chr9	17213099	17213100	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	6697081	6722562
Inversion	Chr5	18619654	19843193	LOC_Os05g33710

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	12022986	Chr1	7736480	LOC_Os05g20480
Translocation	Chr5	17327805	Chr4	8081676	LOC_Os04g14430
Translocation	Chr5	19843191	Chr4	8091816	LOC_Os05g33710
Translocation	Chr5	29261247	Chr4	8339468	LOC_Os05g50990
Translocation	Chr5	29261279	Chr4	8328587	LOC_Os05g50990

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