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Mutant Information

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5380565	A-G	HET	INTERGENIC
SBS	Chr1	16002912	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g28600
SBS	Chr1	16059602	C-T	HET	INTERGENIC
SBS	Chr1	21141101	G-A	HET	STOP_GAINED	LOC_Os01g37790
SBS	Chr1	21141102	G-A	HET	STOP_GAINED	LOC_Os01g37790
SBS	Chr2	4811068	C-G	HOMO	INTRON
SBS	Chr2	22739431	G-A	HET	INTERGENIC
SBS	Chr2	23770014	T-C	HET	INTRON
SBS	Chr2	23985360	C-A	HET	INTERGENIC
SBS	Chr2	24156846	C-T	HET	INTERGENIC
SBS	Chr2	26052017	C-T	HET	INTERGENIC
SBS	Chr2	28546513	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g46740
SBS	Chr3	13240957	A-T	HET	INTRON
SBS	Chr4	8850726	A-G	HET	INTERGENIC
SBS	Chr4	15359694	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g26340
SBS	Chr4	27540752	C-T	HET	UTR_3_PRIME
SBS	Chr5	15602732	G-T	HET	INTERGENIC
SBS	Chr5	15602733	T-G	HET	INTERGENIC
SBS	Chr5	15602735	G-T	HET	INTERGENIC
SBS	Chr5	19655286	G-A	HOMO	INTERGENIC
SBS	Chr6	23619981	G-A	HET	INTRON
SBS	Chr7	21834750	A-G	HET	INTERGENIC
SBS	Chr7	26833401	T-A	HET	INTRON
SBS	Chr8	19346124	T-A	HET	INTERGENIC
SBS	Chr9	6743980	C-T	HET	INTERGENIC
SBS	Chr12	8749047	G-T	HOMO	INTERGENIC
SBS	Chr12	24696565	G-C	HOMO	INTERGENIC

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	740148	740149	1
Deletion	Chr10	3478370	3478371	1
Deletion	Chr1	6267001	6324000	57000	10
Deletion	Chr6	7358639	7358667	28
Deletion	Chr8	9041797	9041804	7	LOC_Os08g14990
Deletion	Chr10	9148152	9148156	4
Deletion	Chr7	11547595	11550459	2864
Deletion	Chr8	11776153	11776154	1
Deletion	Chr4	12111001	12261000	150000	21
Deletion	Chr4	12273001	12920000	647000	108
Deletion	Chr6	13117078	13117087	9
Deletion	Chr1	16147214	16147275	61
Deletion	Chr1	17967349	17967382	33
Deletion	Chr12	19500573	19500574	1
Deletion	Chr10	19776481	19776482	1
Deletion	Chr8	20799808	20799809	1
Deletion	Chr7	20920901	20920902	1
Deletion	Chr2	24001568	24001576	8	LOC_Os02g39740
Deletion	Chr11	24267983	24267986	3
Deletion	Chr11	24676618	24676653	35
Deletion	Chr12	25940393	25940425	32
Deletion	Chr5	28600070	28664412	64342	15
Deletion	Chr1	31488308	31488313	5	LOC_Os01g54730
Deletion	Chr3	34897363	34897369	6

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	25556821	25556828	8
Insertion	Chr12	25900257	25900258	2

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	4335695	4921417	LOC_Os01g08700
Inversion	Chr1	4335715	4921431	LOC_Os01g08700
Inversion	Chr1	6254633	6266329	LOC_Os01g11590
Inversion	Chr1	6254657	6323782	LOC_Os01g11590
Inversion	Chr2	22994669	23754419	LOC_Os02g38060
Inversion	Chr3	26781422	26938482

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr8	2166053	Chr1	23715892
Translocation	Chr8	2168463	Chr1	23715889
Translocation	Chr7	11547611	Chr1	6266762

Tandem duplications: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Tandem Duplication	Chr2	31734238	31798234	63996	11

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