Search Results
| Mutant Information |
|---|
| Mutant Name | FN-159 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-159 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 29
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 1734143 | T-C | HET | UTR_3_PRIME | |
| SBS | Chr1 | 9527006 | G-A | HET | INTERGENIC | |
| SBS | Chr1 | 12515607 | C-G | HET | INTRON | |
| SBS | Chr1 | 13853072 | G-A | HET | INTERGENIC | |
| SBS | Chr1 | 20918464 | A-G | HET | INTERGENIC | |
| SBS | Chr1 | 31326927 | T-A | HET | INTERGENIC | |
| SBS | Chr2 | 17071746 | G-T | HOMO | INTERGENIC | |
| SBS | Chr3 | 23534818 | A-T | HET | INTRON | |
| SBS | Chr3 | 33841823 | G-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 33841825 | T-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 12131632 | A-T | HET | INTERGENIC | |
| SBS | Chr4 | 18067191 | T-C | HET | INTERGENIC | |
| SBS | Chr4 | 23381239 | G-A | HOMO | INTERGENIC | |
| SBS | Chr5 | 4100878 | G-C | HET | INTERGENIC | |
| SBS | Chr5 | 5154448 | C-A | HOMO | INTRON | |
| SBS | Chr5 | 19113351 | C-T | HET | INTERGENIC | |
| SBS | Chr6 | 10859252 | G-A | HET | INTERGENIC | |
| SBS | Chr7 | 7300003 | A-T | HET | INTERGENIC | |
| SBS | Chr7 | 17024774 | C-T | HOMO | INTRON | |
| SBS | Chr8 | 5247044 | G-T | HET | INTERGENIC | |
| SBS | Chr8 | 6545820 | G-T | HOMO | INTERGENIC | |
| SBS | Chr8 | 17598255 | G-A | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr8 | 21436450 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os08g34190 |
| SBS | Chr11 | 3155535 | C-T | HET | INTERGENIC | |
| SBS | Chr11 | 9797206 | C-T | HET | INTRON | |
| SBS | Chr11 | 12749513 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g22220 |
| SBS | Chr11 | 13014394 | C-G | HET | INTRON | |
| SBS | Chr11 | 13877484 | G-A | HET | INTERGENIC | |
| SBS | Chr12 | 22902207 | C-G | HET | INTERGENIC |
Deletions: 16
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr1 | 8001 | 247000 | 239000 | 49 |
| Deletion | Chr3 | 1421487 | 1421499 | 12 | |
| Deletion | Chr9 | 1545460 | 1549165 | 3705 | LOC_Os09g03210 |
| Deletion | Chr5 | 1996962 | 1996980 | 18 | |
| Deletion | Chr9 | 3892419 | 3892427 | 8 | |
| Deletion | Chr6 | 4153485 | 4153486 | 1 | |
| Deletion | Chr4 | 5616622 | 5616625 | 3 | |
| Deletion | Chr3 | 7470690 | 7471360 | 670 | |
| Deletion | Chr5 | 9390192 | 9390198 | 6 | |
| Deletion | Chr3 | 10222439 | 10222881 | 442 | |
| Deletion | Chr11 | 18233774 | 18233776 | 2 | |
| Deletion | Chr5 | 19539819 | 19539820 | 1 | |
| Deletion | Chr6 | 23518659 | 23518667 | 8 | |
| Deletion | Chr12 | 24670256 | 24670260 | 4 | |
| Deletion | Chr2 | 26127121 | 26127125 | 4 | LOC_Os02g43314 |
| Deletion | Chr1 | 32786500 | 32786507 | 7 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr2 | 16468454 | 16468457 | 4 | LOC_Os02g27810 |
| Insertion | Chr1 | 14702304 | 14702304 | 1 |
No Inversion
Translocations: 1
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr3 | 10222864 | Chr2 | 24899825 | LOC_Os02g41520 |