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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11651420	C-T	HET	INTERGENIC
SBS	Chr1	13724468	C-T	HET	INTERGENIC
SBS	Chr1	14909647	A-T	HET	INTERGENIC
SBS	Chr1	25484684	A-G	HET	INTERGENIC
SBS	Chr1	30866945	G-A	HET	INTERGENIC
SBS	Chr1	31715366	C-G	HOMO	INTERGENIC
SBS	Chr1	42608504	T-A	HET	INTRON
SBS	Chr2	13959368	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g24090
SBS	Chr2	17705090	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g29760
SBS	Chr3	15914331	C-A	HET	INTERGENIC
SBS	Chr3	17907529	C-T	HET	INTERGENIC
SBS	Chr3	31953963	G-A	HOMO	INTRON
SBS	Chr4	23889356	C-A	HOMO	INTRON
SBS	Chr4	30851457	G-A	HOMO	INTERGENIC
SBS	Chr4	34592015	A-G	HET	INTERGENIC
SBS	Chr5	24869730	G-A	HET	INTERGENIC
SBS	Chr6	30214619	A-G	HET	INTRON
SBS	Chr8	724903	C-T	HET	INTERGENIC
SBS	Chr8	1180339	T-C	HOMO	INTERGENIC
SBS	Chr8	6970361	C-T	HET	INTERGENIC
SBS	Chr8	16079804	T-A	HOMO	INTERGENIC
SBS	Chr8	18045025	T-C	HET	SYNONYMOUS_CODING
SBS	Chr8	23760506	A-T	HOMO	INTRON
SBS	Chr8	26956450	C-T	HOMO	INTERGENIC
SBS	Chr9	2241288	C-T	HET	INTRON
SBS	Chr9	13058704	C-T	HET	INTERGENIC
SBS	Chr9	13058705	C-T	HET	INTERGENIC
SBS	Chr10	7938772	G-A	HOMO	INTERGENIC
SBS	Chr12	792719	C-T	HOMO	INTERGENIC
SBS	Chr12	7873393	C-T	HET	INTERGENIC
SBS	Chr12	8727640	G-C	HET	INTRON
SBS	Chr12	24065302	C-T	HET	INTERGENIC
SBS	Chr12	27216818	G-A	HET	INTRON

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	1504686	1504695	9
Deletion	Chr6	2308007	2308013	6
Deletion	Chr3	2906331	2906336	5	LOC_Os03g05806
Deletion	Chr10	3727809	3727810	1
Deletion	Chr7	5281169	5281173	4
Deletion	Chr8	5625712	5625719	7
Deletion	Chr1	6058929	6058930	1	LOC_Os01g11300
Deletion	Chr8	6132338	6132345	7
Deletion	Chr10	10402001	10556000	154000	17
Deletion	Chr3	10456034	10456036	2
Deletion	Chr9	13464001	14102000	638000	95
Deletion	Chr10	13695368	13695370	2
Deletion	Chr2	15656206	15656207	1
Deletion	Chr9	16562531	16562547	16
Deletion	Chr6	22498419	22498436	17
Deletion	Chr1	23573781	23573788	7
Deletion	Chr8	24519606	24519631	25
Deletion	Chr12	25656534	25656536	2	LOC_Os12g41410
Deletion	Chr8	27592886	27592910	24	LOC_Os08g43654
Deletion	Chr3	31738759	31738763	4

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr7	14832301	14832302	2
Insertion	Chr1	40482421	40482423	3
Insertion	Chr2	6394878	6394879	2

No Inversion

No Translocation

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