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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	29491675	T-C	HET	INTRON
SBS	Chr1	32960425	A-T	HET	INTRON
SBS	Chr1	5272553	G-A	HET	INTRON
SBS	Chr10	4931503	T-A	HET	INTERGENIC
SBS	Chr10	6862600	C-T	HET	INTRON
SBS	Chr10	7337190	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g13550
SBS	Chr10	7535167	C-T	HET	INTERGENIC
SBS	Chr10	8539512	A-G	HET	INTERGENIC
SBS	Chr10	9583892	T-G	HET	INTRON
SBS	Chr11	16039070	C-T	HET	INTERGENIC
SBS	Chr11	21033352	G-T	HET	STOP_GAINED	LOC_Os11g35840
SBS	Chr11	8460261	G-C	HOMO	INTERGENIC
SBS	Chr12	8211596	C-G	HET	INTRON
SBS	Chr2	294985	A-T	HOMO	INTERGENIC
SBS	Chr3	19818810	C-T	HET	INTERGENIC
SBS	Chr3	23144673	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g41624
SBS	Chr4	17640103	G-C	HET	INTERGENIC
SBS	Chr4	1787471	C-T	HET	INTERGENIC
SBS	Chr4	18488780	C-A	HOMO	INTERGENIC
SBS	Chr4	23338071	G-T	HET	INTERGENIC
SBS	Chr4	28057266	A-T	HET	INTERGENIC
SBS	Chr5	28069496	T-C	HET	INTERGENIC
SBS	Chr5	29886601	T-A	HOMO	INTRON
SBS	Chr6	15559218	G-A	HET	INTRON
SBS	Chr7	2315007	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g05190
SBS	Chr7	2315008	C-T	HET	SYNONYMOUS_CODING
SBS	Chr7	5490354	C-T	HOMO	INTERGENIC
SBS	Chr7	5598667	A-C	HOMO	UTR_5_PRIME
SBS	Chr8	12569687	G-A	HOMO	INTERGENIC
SBS	Chr8	21704903	T-A	HET	INTERGENIC
SBS	Chr8	21841522	A-G	HET	INTERGENIC
SBS	Chr8	2596687	C-T	HOMO	INTERGENIC
SBS	Chr9	9780718	A-G	HOMO	INTERGENIC

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	1328141	1328147	6	LOC_Os02g03280
Deletion	Chr10	1663578	1663584	6
Deletion	Chr1	3558919	3558920	1
Deletion	Chr9	9848765	9848766	1
Deletion	Chr3	17141001	17293000	152000	27
Deletion	Chr3	18749006	18749008	2	LOC_Os03g32730
Deletion	Chr11	19069264	19069266	2	LOC_Os11g32270
Deletion	Chr12	19200845	19200846	1
Deletion	Chr1	23206527	23206528	1
Deletion	Chr3	23888293	23888350	57
Deletion	Chr7	28085934	28085935	1
Deletion	Chr3	30783563	30783564	1

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	19592499	19592499	1
Insertion	Chr3	26744706	26744706	1
Insertion	Chr5	24432561	24432561	1
Insertion	Chr5	25234605	25234608	4

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	7024161	7027073
Inversion	Chr1	11254638	11264981	2
Inversion	Chr1	11254668	11264999	2
Inversion	Chr3	17140661	17293661
Inversion	Chr3	17228375	26400276	2
Inversion	Chr3	17293004	17293655	LOC_Os03g30300
Inversion	Chr3	24648399	26400276	LOC_Os03g46650

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	27428236	Chr2	13135709	LOC_Os02g22080

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