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Mutant Information

Variant Information

Single base substitutions: 37

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15236785	A-T	HOMO	INTERGENIC
SBS	Chr1	36117482	G-A	HOMO	INTRON
SBS	Chr2	3889748	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g07520
SBS	Chr2	13843273	C-T	HET	INTRON
SBS	Chr3	4269098	C-T	HET	INTRON
SBS	Chr3	8147929	C-G	HET	INTERGENIC
SBS	Chr3	29722617	G-T	HET	INTERGENIC
SBS	Chr3	30372147	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g52950
SBS	Chr4	6356967	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g11620
SBS	Chr4	23624265	G-T	HOMO	INTERGENIC
SBS	Chr4	26181650	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g44220
SBS	Chr4	34426439	G-T	HOMO	INTERGENIC
SBS	Chr5	12101969	A-T	HET	SYNONYMOUS_CODING
SBS	Chr5	15436276	G-C	HET	INTERGENIC
SBS	Chr5	24242839	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g41390
SBS	Chr6	19583128	A-T	HET	INTRON
SBS	Chr6	20146627	G-T	HET	INTRON
SBS	Chr6	30968885	T-C	HET	INTRON
SBS	Chr7	5637664	C-T	HET	INTERGENIC
SBS	Chr7	6192930	G-C	HET	INTRON
SBS	Chr7	13809645	C-T	HET	INTERGENIC
SBS	Chr7	15385210	C-T	HET	INTERGENIC
SBS	Chr7	17403130	C-T	HET	INTERGENIC
SBS	Chr7	19044128	T-C	HOMO	INTERGENIC
SBS	Chr7	19156138	C-T	HOMO	INTERGENIC
SBS	Chr7	23939295	T-A	HET	INTERGENIC
SBS	Chr7	28181429	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g47120
SBS	Chr8	17030351	G-A	HET	INTERGENIC
SBS	Chr8	23625087	T-C	HOMO	UTR_3_PRIME
SBS	Chr9	1721287	C-T	HET	INTERGENIC
SBS	Chr10	1688173	G-C	HOMO	INTERGENIC
SBS	Chr10	15468601	C-G	HOMO	INTERGENIC
SBS	Chr10	20765509	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g38960
SBS	Chr10	21226608	G-T	HOMO	UTR_3_PRIME
SBS	Chr11	1172428	A-G	HET	INTERGENIC
SBS	Chr12	1129560	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g03020
SBS	Chr12	8292296	A-T	HOMO	INTERGENIC

Deletions: 29

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	796958	796970	12
Deletion	Chr7	2144001	2390000	246000	42
Deletion	Chr2	2656143	2656152	9	LOC_Os02g05490
Deletion	Chr1	2892440	2892441	1
Deletion	Chr10	2912160	2912176	16
Deletion	Chr6	4186862	4186872	10
Deletion	Chr9	4349164	4349165	1
Deletion	Chr5	6666606	6666610	4	LOC_Os05g11750
Deletion	Chr4	6911165	6911191	26
Deletion	Chr1	7658718	7658724	6
Deletion	Chr1	14140690	14140709	19
Deletion	Chr10	14179246	14179255	9
Deletion	Chr2	14609727	14609746	19
Deletion	Chr1	15239490	15239495	5
Deletion	Chr7	16506042	16506076	34
Deletion	Chr11	17738169	17738171	2
Deletion	Chr5	18706226	18706251	25
Deletion	Chr9	20892998	20893240	242
Deletion	Chr9	20893688	20893690	2
Deletion	Chr1	20907024	20907028	4
Deletion	Chr9	21177862	21180896	3034
Deletion	Chr12	24354103	24354152	49
Deletion	Chr4	25857839	25857863	24	LOC_Os04g43690
Deletion	Chr4	26468964	26468968	4
Deletion	Chr4	26620866	26620893	27
Deletion	Chr1	29195879	29195881	2
Deletion	Chr2	31768291	31768292	1	LOC_Os02g51860
Deletion	Chr3	34699945	34699949	4
Deletion	Chr3	35198477	35198487	10

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	6203339	6203342	4
Insertion	Chr12	23521192	23521195	4	LOC_Os12g38320
Insertion	Chr11	28868362	28868363	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	219648	1724782	LOC_Os11g04220
Inversion	Chr7	1745641	2143339	2
Inversion	Chr7	1745710	2389963	2
Inversion	Chr2	16557809	17315895	LOC_Os02g29190
Inversion	Chr4	26090442	26242175

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	1124937	Chr2	24803723	LOC_Os02g40930
Translocation	Chr6	1318987	Chr2	24803946	LOC_Os02g40930
Translocation	Chr11	1717708	Chr5	24088941	LOC_Os11g04210
Translocation	Chr10	22050947	Chr9	20893227
Translocation	Chr10	22050951	Chr9	20893004

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