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| Mutant Information |
|---|
| Mutant Name | FN-165 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-165 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 20
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 19706591 | T-C | HET | INTERGENIC | |
| SBS | Chr11 | 18480417 | T-C | HET | INTERGENIC | |
| SBS | Chr11 | 24419663 | G-T | HOMO | INTERGENIC | |
| SBS | Chr12 | 26788634 | G-A | HET | INTERGENIC | |
| SBS | Chr12 | 7556950 | C-A | HET | INTERGENIC | |
| SBS | Chr2 | 34896432 | A-G | HET | INTERGENIC | |
| SBS | Chr2 | 35212696 | T-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 11114917 | T-A | HET | INTRON | |
| SBS | Chr3 | 29228643 | A-G | HOMO | INTERGENIC | |
| SBS | Chr4 | 12771900 | C-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 17676636 | G-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 28517719 | G-C | HET | INTERGENIC | |
| SBS | Chr4 | 30923720 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g52060 |
| SBS | Chr4 | 30923721 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g52060 |
| SBS | Chr6 | 4673354 | A-T | HET | INTRON | |
| SBS | Chr6 | 7660355 | C-T | HET | INTERGENIC | |
| SBS | Chr7 | 10635929 | C-A | HET | INTERGENIC | |
| SBS | Chr8 | 16362610 | C-T | HET | INTERGENIC | |
| SBS | Chr8 | 4923703 | C-T | HET | INTRON | |
| SBS | Chr9 | 2742586 | C-G | HET | SYNONYMOUS_CODING |
Deletions: 13
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr5 | 3369992 | 3369993 | 1 | |
| Deletion | Chr2 | 4804275 | 4804276 | 1 | LOC_Os02g09340 |
| Deletion | Chr2 | 8691241 | 8691243 | 2 | |
| Deletion | Chr10 | 9633367 | 9633374 | 7 | LOC_Os10g18920 |
| Deletion | Chr9 | 9807357 | 9807359 | 2 | |
| Deletion | Chr6 | 11173153 | 11173154 | 1 | |
| Deletion | Chr6 | 11319133 | 11319134 | 1 | |
| Deletion | Chr10 | 13365347 | 13365348 | 1 | |
| Deletion | Chr9 | 22829426 | 22829435 | 9 | LOC_Os09g39820 |
| Deletion | Chr3 | 23391698 | 23391699 | 1 | |
| Deletion | Chr4 | 24580699 | 24580711 | 12 | |
| Deletion | Chr1 | 28676145 | 28676146 | 1 | LOC_Os01g49930 |
| Deletion | Chr2 | 28757600 | 28757606 | 6 |
Insertions: 5
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr4 | 24909241 | 25623933 |
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 13045632 | Chr5 | 23156678 | |
| Translocation | Chr12 | 13045652 | Chr5 | 23154560 | LOC_Os05g39470 |