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Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	28566540	A-T	HOMO	INTERGENIC
SBS	Chr10	4440214	C-T	HET	INTERGENIC
SBS	Chr11	1762454	C-T	HET	INTERGENIC
SBS	Chr12	16572466	C-T	HET	SYNONYMOUS_CODING
SBS	Chr12	19509480	G-T	HOMO	INTRON
SBS	Chr12	27369720	G-A	HET	INTERGENIC
SBS	Chr12	7240864	A-C	HET	INTERGENIC
SBS	Chr12	8954890	G-T	HOMO	INTRON
SBS	Chr2	11576598	C-G	HET	INTERGENIC
SBS	Chr2	14798106	C-A	HET	INTERGENIC
SBS	Chr2	34021908	A-T	HET	INTERGENIC
SBS	Chr2	5949418	C-A	HET	INTERGENIC
SBS	Chr2	5949419	G-A	HET	INTERGENIC
SBS	Chr3	15654858	G-A	HET	INTRON
SBS	Chr3	17963854	A-G	HET	INTERGENIC
SBS	Chr3	4141180	T-A	HET	INTRON
SBS	Chr3	4141181	T-A	HET	INTRON
SBS	Chr3	4141293	A-G	HET	INTRON
SBS	Chr4	10792584	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr4	1538725	C-T	HET	INTERGENIC
SBS	Chr4	15863762	C-T	HET	INTERGENIC
SBS	Chr4	29557157	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g49560
SBS	Chr4	5189255	T-C	HET	INTERGENIC
SBS	Chr4	5497576	A-C	HET	INTERGENIC
SBS	Chr6	5421478	T-C	HET	INTRON
SBS	Chr6	9989499	A-T	HET	INTERGENIC
SBS	Chr6	9989500	A-T	HET	INTERGENIC
SBS	Chr7	13867791	C-T	HET	INTERGENIC
SBS	Chr7	14026266	C-T	HOMO	INTERGENIC
SBS	Chr7	22097045	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g36900
SBS	Chr7	4130929	C-T	HET	INTERGENIC
SBS	Chr8	16603022	C-T	HET	SYNONYMOUS_CODING
SBS	Chr9	14346924	G-C	HET	INTERGENIC
SBS	Chr9	3981344	C-T	HET	INTERGENIC
SBS	Chr9	6162278	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g11110

Deletions: 29

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	609741	609742	1
Deletion	Chr10	635759	635763	4
Deletion	Chr4	3144577	3144584	7
Deletion	Chr2	4204270	4204276	6
Deletion	Chr2	4556631	4557827	1196	LOC_Os02g08460
Deletion	Chr3	5165120	5165186	66
Deletion	Chr4	5187320	5187321	1
Deletion	Chr5	5281316	5281321	5
Deletion	Chr6	6129209	6129216	7	LOC_Os06g11560
Deletion	Chr6	9912599	9914812	2213	LOC_Os06g17100
Deletion	Chr12	11754006	11754016	10
Deletion	Chr11	13225627	13225631	4
Deletion	Chr6	14266529	14266530	1
Deletion	Chr2	15760571	15760579	8
Deletion	Chr3	16204375	16204446	71
Deletion	Chr12	17497167	17497171	4	LOC_Os12g29450
Deletion	Chr5	18249535	18249548	13
Deletion	Chr3	19302504	19302514	10	LOC_Os03g33760
Deletion	Chr10	20002094	20011335	9241	LOC_Os10g37340
Deletion	Chr11	20410001	20626000	216000	32
Deletion	Chr4	20574010	20574011	1
Deletion	Chr11	20633001	20663000	30000	6
Deletion	Chr11	20667001	20713000	46000	6
Deletion	Chr4	23632277	23632281	4
Deletion	Chr7	23744078	23744083	5
Deletion	Chr1	24120778	24120782	4
Deletion	Chr12	26801223	26801224	1
Deletion	Chr5	27402829	27402831	2
Deletion	Chr2	29039200	29039207	7	LOC_Os02g47530

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	9425088	9425105	18
Insertion	Chr11	22202276	22202277	2
Insertion	Chr2	8624505	8624505	1
Insertion	Chr2	9518323	9518324	2
Insertion	Chr3	30857901	30857901	1
Insertion	Chr5	2567681	2567682	2
Insertion	Chr8	26378655	26378658	4

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	4613168	4682286	LOC_Os10g08620
Inversion	Chr10	4682291	5511266	2
Inversion	Chr12	26115114	27279774	LOC_Os12g42110

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	8573643	Chr3	1730843	LOC_Os04g15780

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