Search Results
| Mutant Information |
|---|
| Mutant Name | FN-168 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-168 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 34
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 4922948 | A-T | HET | INTERGENIC | |
| SBS | Chr1 | 8568663 | A-C | HET | INTRON | |
| SBS | Chr1 | 10770004 | C-T | HET | INTERGENIC | |
| SBS | Chr1 | 14699947 | T-G | HET | NON_SYNONYMOUS_CODING | LOC_Os01g25910 |
| SBS | Chr1 | 15523040 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os01g27790 |
| SBS | Chr1 | 16385920 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g29230 |
| SBS | Chr1 | 40927829 | C-T | HOMO | INTRON | |
| SBS | Chr1 | 42059100 | G-T | HET | UTR_3_PRIME | |
| SBS | Chr2 | 9276413 | G-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 6785579 | A-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr4 | 2445834 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g05030 |
| SBS | Chr5 | 12354249 | A-C | HET | NON_SYNONYMOUS_CODING | LOC_Os05g20990 |
| SBS | Chr5 | 13119792 | A-T | HET | INTERGENIC | |
| SBS | Chr5 | 19741156 | T-C | HET | INTERGENIC | |
| SBS | Chr6 | 4774133 | G-A | HET | INTERGENIC | |
| SBS | Chr7 | 23824603 | C-A | HOMO | INTERGENIC | |
| SBS | Chr8 | 694501 | A-C | HET | INTERGENIC | |
| SBS | Chr8 | 8227896 | T-C | HOMO | INTERGENIC | |
| SBS | Chr8 | 13589320 | A-G | HET | INTERGENIC | |
| SBS | Chr8 | 14249628 | C-T | HET | INTERGENIC | |
| SBS | Chr8 | 15421049 | C-T | HET | INTRON | |
| SBS | Chr8 | 21053572 | A-G | HOMO | INTERGENIC | |
| SBS | Chr8 | 23290992 | A-T | HOMO | INTRON | |
| SBS | Chr8 | 24178719 | T-A | HOMO | INTERGENIC | |
| SBS | Chr9 | 9581375 | T-A | HET | INTERGENIC | |
| SBS | Chr10 | 184297 | C-T | HOMO | INTERGENIC | |
| SBS | Chr10 | 17322782 | T-C | HET | INTERGENIC | |
| SBS | Chr10 | 21013177 | C-T | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr11 | 13178547 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os11g22920 |
| SBS | Chr11 | 14081810 | T-G | HET | INTERGENIC | |
| SBS | Chr11 | 17211045 | G-A | HET | INTRON | |
| SBS | Chr12 | 426311 | G-A | HOMO | INTERGENIC | |
| SBS | Chr12 | 1749098 | T-C | HET | INTRON | |
| SBS | Chr12 | 12445475 | T-C | HET | INTERGENIC |
Deletions: 11
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 3243763 | 3243765 | 2 | |
| Deletion | Chr12 | 12755201 | 12755202 | 1 | |
| Deletion | Chr5 | 13635594 | 13635595 | 1 | |
| Deletion | Chr10 | 14914132 | 14914133 | 1 | |
| Deletion | Chr4 | 22414532 | 22414533 | 1 | LOC_Os04g37690 |
| Deletion | Chr8 | 24178712 | 24178715 | 3 | |
| Deletion | Chr5 | 27048001 | 27110000 | 62000 | 8 |
| Deletion | Chr8 | 27327049 | 27327051 | 2 | |
| Deletion | Chr2 | 30236307 | 30236311 | 4 | |
| Deletion | Chr2 | 30525489 | 30525491 | 2 | |
| Deletion | Chr1 | 40068829 | 40068834 | 5 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr5 | 17347993 | 17347993 | 1 |
No Inversion
No Translocation