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Mutant Information

Mutant Name	FN-170 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-170 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 49

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11107716	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g19600
SBS	Chr1	11927183	G-A	HET	INTERGENIC
SBS	Chr1	13528212	T-G	HOMO	INTRON
SBS	Chr1	17056545	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g31190
SBS	Chr1	17267463	A-T	HOMO	INTRON
SBS	Chr1	17267471	A-C	HOMO	INTRON
SBS	Chr1	30821548	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g53640
SBS	Chr1	30821549	A-T	HET	SYNONYMOUS_CODING
SBS	Chr1	36032230	A-C	HET	INTERGENIC
SBS	Chr1	40611596	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g70170
SBS	Chr1	40611600	G-A	HET	SYNONYMOUS_CODING
SBS	Chr1	8443596	A-G	HET	INTERGENIC
SBS	Chr1	8828234	T-C	HET	INTERGENIC
SBS	Chr10	18849951	C-T	HET	INTERGENIC
SBS	Chr10	18849953	A-T	HET	INTERGENIC
SBS	Chr11	11642319	G-A	HET	STOP_GAINED	LOC_Os11g20150
SBS	Chr11	12913892	A-G	HET	INTERGENIC
SBS	Chr11	8383437	T-C	HET	INTERGENIC
SBS	Chr12	14954085	T-C	HOMO	INTERGENIC
SBS	Chr12	2689143	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g05840
SBS	Chr12	2689144	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr12	2689145	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g05840
SBS	Chr12	2689272	A-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g05840
SBS	Chr2	25674916	A-C	HOMO	INTRON
SBS	Chr2	25807047	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g42910
SBS	Chr3	13021165	A-G	HET	INTERGENIC
SBS	Chr3	14706544	T-C	HET	INTERGENIC
SBS	Chr3	23123639	G-A	HET	INTERGENIC
SBS	Chr3	30436313	G-A	HOMO	INTERGENIC
SBS	Chr3	4430620	A-G	HET	INTRON
SBS	Chr4	16237743	G-A	HET	INTERGENIC
SBS	Chr4	25232268	G-A	HET	INTERGENIC
SBS	Chr4	25608256	C-G	HET	UTR_3_PRIME
SBS	Chr4	28657501	C-T	HET	INTERGENIC
SBS	Chr4	31926780	C-G	HET	INTRON
SBS	Chr4	33090473	T-C	HET	INTERGENIC
SBS	Chr5	13868244	C-A	HET	SYNONYMOUS_CODING
SBS	Chr6	3993743	T-C	HET	INTERGENIC
SBS	Chr7	3626375	A-G	HET	INTRON
SBS	Chr7	4321447	T-C	HET	INTERGENIC
SBS	Chr8	12761266	C-T	HET	INTERGENIC
SBS	Chr8	21037451	T-C	HET	INTERGENIC
SBS	Chr8	22297841	T-G	HET	INTRON
SBS	Chr8	27878378	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g44280
SBS	Chr8	4401552	C-A	HET	INTERGENIC
SBS	Chr9	13838883	G-A	HOMO	INTRON
SBS	Chr9	2000481	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os09g03910
SBS	Chr9	20575411	C-T	HET	INTERGENIC
SBS	Chr9	21247932	A-G	HET	INTERGENIC

Deletions: 30

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	2156333	2156340	7
Deletion	Chr7	3626372	3626373	1
Deletion	Chr5	5390216	5390217	1	LOC_Os05g09530
Deletion	Chr5	5672254	5672282	28
Deletion	Chr6	5691817	5691826	9
Deletion	Chr5	7926794	7926798	4
Deletion	Chr4	8838395	8838396	1
Deletion	Chr11	9128712	9128718	6
Deletion	Chr3	10506315	10506316	1
Deletion	Chr11	13091414	13091415	1
Deletion	Chr7	13101569	13101588	19
Deletion	Chr2	14751123	14751124	1	LOC_Os02g25290
Deletion	Chr8	15193421	15193424	3
Deletion	Chr9	16338217	16338218	1	LOC_Os09g26880
Deletion	Chr9	16683497	16683510	13
Deletion	Chr4	18721975	18721992	17
Deletion	Chr1	19202259	19202260	1
Deletion	Chr1	19724419	19724438	19
Deletion	Chr11	21300032	21300033	1	LOC_Os11g36200
Deletion	Chr3	22872246	22872251	5
Deletion	Chr11	25099430	25099432	2
Deletion	Chr2	25674857	25674859	2	LOC_Os02g42690
Deletion	Chr7	25871490	25871493	3
Deletion	Chr12	26836625	26836635	10
Deletion	Chr5	27983062	27983068	6
Deletion	Chr6	28711656	28711658	2	LOC_Os06g47370
Deletion	Chr3	30186777	30186779	2
Deletion	Chr4	30678941	30678948	7	LOC_Os04g51770
Deletion	Chr1	36154388	36154392	4
Deletion	Chr1	41028284	41246188	217904	40

No Insertion

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	1021618	1751829	LOC_Os12g04170
Inversion	Chr12	1515711	1751827	2
Inversion	Chr9	7003343	8344656	LOC_Os09g12290

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	9052713	Chr4	13069486	2
Translocation	Chr12	15822761	Chr1	37426820	LOC_Os01g64500
Translocation	Chr12	15823022	Chr1	37426736	LOC_Os01g64500

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