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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	38985271	T-C	HET	INTERGENIC
SBS	Chr1	7230555	G-A	HET	INTERGENIC
SBS	Chr10	11402575	C-T	HOMO	INTERGENIC
SBS	Chr10	13349067	C-T	HET	INTERGENIC
SBS	Chr10	8770644	A-G	HOMO	INTRON
SBS	Chr11	19888642	G-C	HOMO	INTERGENIC
SBS	Chr12	12417761	T-A	HET	INTRON
SBS	Chr12	12601246	C-T	HET	INTERGENIC
SBS	Chr12	14567988	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os12g25300
SBS	Chr12	17238172	C-T	HET	INTERGENIC
SBS	Chr12	5686199	A-G	HET	INTRON
SBS	Chr12	9493406	C-T	HET	INTERGENIC
SBS	Chr2	17994060	A-C	HET	INTERGENIC
SBS	Chr2	31610069	A-G	HET	SYNONYMOUS_CODING
SBS	Chr2	33110797	C-G	HET	INTERGENIC
SBS	Chr2	3630970	T-C	HET	INTRON
SBS	Chr3	26404708	G-A	HET	INTRON
SBS	Chr3	27122060	T-C	HET	INTRON
SBS	Chr5	29483414	G-T	HOMO	INTRON
SBS	Chr6	19660724	A-G	HET	INTERGENIC
SBS	Chr6	2982183	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g06390
SBS	Chr6	9026370	T-C	HET	INTERGENIC
SBS	Chr7	11598344	C-T	HET	INTERGENIC
SBS	Chr7	11908520	T-C	HOMO	INTERGENIC
SBS	Chr7	15066633	T-G	HOMO	INTERGENIC
SBS	Chr7	18489318	G-C	HOMO	INTERGENIC
SBS	Chr7	7602798	C-T	HET	INTERGENIC
SBS	Chr7	8304360	C-A	HOMO	INTRON
SBS	Chr8	297893	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g01480
SBS	Chr8	9643852	T-A	HOMO	INTERGENIC
SBS	Chr9	403565	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g01570

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	7198001	7218000	20000	3
Deletion	Chr6	7227617	7227618	1
Deletion	Chr6	7851454	7851463	9	LOC_Os06g14080
Deletion	Chr9	9694649	9694650	1	LOC_Os09g15860
Deletion	Chr7	11699942	11699966	24
Deletion	Chr6	12605847	12605851	4
Deletion	Chr6	12916406	12916407	1
Deletion	Chr3	14515035	14515037	2	LOC_Os03g25390
Deletion	Chr3	15764188	15764191	3	LOC_Os03g27480
Deletion	Chr9	16062938	16090836	27898	2
Deletion	Chr6	16459203	16459207	4
Deletion	Chr5	18021088	18021098	10
Deletion	Chr2	18802395	18802398	3
Deletion	Chr4	19443664	19443666	2
Deletion	Chr11	25142583	25142587	4
Deletion	Chr6	25700336	25700337	1
Deletion	Chr3	28075422	28075423	1
Deletion	Chr2	29615182	29615192	10
Deletion	Chr1	35834289	35834308	19	LOC_Os01g61910

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	4345448	4345448	1
Insertion	Chr10	13395010	13395010	1
Insertion	Chr3	14225598	14225599	2
Insertion	Chr8	26530008	26530008	1

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	7218335	7426315	2
Inversion	Chr1	7235088	7424398	LOC_Os01g13310
Inversion	Chr1	7235100	7430634	LOC_Os01g13320
Inversion	Chr1	7742787	8127122	2
Inversion	Chr12	11143709	11378081	2
Inversion	Chr12	11185168	11378088	2

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	11185165	Chr2	11350151	LOC_Os12g19290
Translocation	Chr11	24226033	Chr4	34875686	LOC_Os04g58630
Translocation	Chr11	24226046	Chr4	34872917	LOC_Os04g58630

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