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| Mutant Information |
|---|
| Mutant Name | FN-172 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-172 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 28
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 21482642 | C-T | HOMO | INTERGENIC | |
| SBS | Chr1 | 34602708 | G-A | HOMO | INTERGENIC | |
| SBS | Chr1 | 8815830 | G-A | HET | INTERGENIC | |
| SBS | Chr1 | 8815831 | A-T | HET | INTERGENIC | |
| SBS | Chr10 | 16607758 | C-A | HET | INTERGENIC | |
| SBS | Chr10 | 21204933 | T-C | HET | INTERGENIC | |
| SBS | Chr11 | 20724855 | C-T | HET | INTERGENIC | |
| SBS | Chr11 | 20724856 | G-T | HET | INTERGENIC | |
| SBS | Chr12 | 13452891 | C-T | HOMO | INTERGENIC | |
| SBS | Chr12 | 8545260 | A-G | HET | INTERGENIC | |
| SBS | Chr2 | 23958099 | C-G | HET | INTERGENIC | |
| SBS | Chr3 | 34352986 | G-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 29361092 | T-A | HET | INTERGENIC | |
| SBS | Chr4 | 5201340 | C-A | HET | INTRON | |
| SBS | Chr4 | 5201341 | C-T | HET | INTRON | |
| SBS | Chr6 | 12672722 | C-T | HET | INTERGENIC | |
| SBS | Chr6 | 17184497 | T-A | HET | INTERGENIC | |
| SBS | Chr6 | 17652576 | T-A | HET | INTERGENIC | |
| SBS | Chr6 | 27956423 | T-C | HET | INTERGENIC | |
| SBS | Chr7 | 10923291 | T-G | HET | INTRON | |
| SBS | Chr7 | 18765005 | T-C | HET | INTERGENIC | |
| SBS | Chr7 | 26924359 | T-A | HET | INTERGENIC | |
| SBS | Chr7 | 8437178 | G-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr8 | 23941551 | G-A | HET | INTERGENIC | |
| SBS | Chr8 | 8954884 | A-G | HET | INTERGENIC | |
| SBS | Chr8 | 9526908 | A-G | HET | INTRON | |
| SBS | Chr9 | 11209303 | A-T | HET | INTRON | |
| SBS | Chr9 | 13805119 | C-G | HOMO | INTRON |
Deletions: 21
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 305669 | 305670 | 1 | |
| Deletion | Chr3 | 1283887 | 1283906 | 19 | |
| Deletion | Chr4 | 1727395 | 1727402 | 7 | |
| Deletion | Chr9 | 2711737 | 2711738 | 1 | |
| Deletion | Chr6 | 7252236 | 7252237 | 1 | |
| Deletion | Chr2 | 7757790 | 7757798 | 8 | |
| Deletion | Chr7 | 8345144 | 8345345 | 201 | |
| Deletion | Chr8 | 8971397 | 8971398 | 1 | |
| Deletion | Chr10 | 12737942 | 12737958 | 16 | LOC_Os10g24770 |
| Deletion | Chr11 | 18166624 | 18166684 | 60 | |
| Deletion | Chr12 | 19667968 | 19667970 | 2 | |
| Deletion | Chr6 | 19921135 | 19921157 | 22 | |
| Deletion | Chr6 | 20508965 | 20508985 | 20 | |
| Deletion | Chr3 | 21007830 | 21007842 | 12 | |
| Deletion | Chr5 | 26784223 | 26784231 | 8 | |
| Deletion | Chr5 | 28297593 | 28297594 | 1 | |
| Deletion | Chr4 | 28344668 | 28344673 | 5 | |
| Deletion | Chr4 | 31493665 | 31493679 | 14 | LOC_Os04g52880 |
| Deletion | Chr1 | 32220115 | 32220132 | 17 | |
| Deletion | Chr2 | 32916369 | 32916385 | 16 | LOC_Os02g53750 |
| Deletion | Chr1 | 35028744 | 35028745 | 1 |
Insertions: 5
No Inversion
No Translocation