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Mutant Information

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11034589	G-T	HOMO	INTRON
SBS	Chr1	21363185	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g38140
SBS	Chr1	27951624	T-C	HET	INTERGENIC
SBS	Chr11	21794592	C-A	HET	INTERGENIC
SBS	Chr11	500450	G-C	HET	SYNONYMOUS_CODING
SBS	Chr12	11576148	C-G	HET	SYNONYMOUS_CODING
SBS	Chr2	15135977	T-C	HET	INTERGENIC
SBS	Chr2	15983920	C-G	HET	INTERGENIC
SBS	Chr2	17609893	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os02g29600
SBS	Chr2	26729103	G-C	HOMO	INTERGENIC
SBS	Chr2	6185602	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g11930
SBS	Chr3	1881063	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g04110
SBS	Chr3	19746861	A-G	HOMO	INTRON
SBS	Chr3	21780022	T-C	HOMO	INTERGENIC
SBS	Chr3	22821146	C-A	HOMO	INTERGENIC
SBS	Chr3	28291739	T-G	HET	INTERGENIC
SBS	Chr3	32172384	A-G	HET	INTERGENIC
SBS	Chr3	33076310	G-C	HET	INTERGENIC
SBS	Chr3	33180008	T-A	HET	INTERGENIC
SBS	Chr3	33367604	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g58590
SBS	Chr3	4965888	C-G	HET	INTERGENIC
SBS	Chr3	942337	T-C	HET	INTERGENIC
SBS	Chr4	22511799	G-T	HET	INTERGENIC
SBS	Chr4	3220134	A-T	HOMO	INTERGENIC
SBS	Chr5	14146555	G-A	HET	INTERGENIC
SBS	Chr5	15796835	C-T	HET	INTRON
SBS	Chr5	28292848	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g49300
SBS	Chr5	28879924	C-T	HOMO	INTERGENIC
SBS	Chr5	8477390	A-T	HET	SYNONYMOUS_CODING
SBS	Chr6	25103688	G-A	HET	INTERGENIC
SBS	Chr6	4219362	G-T	HET	INTERGENIC
SBS	Chr7	20032173	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr8	8622737	A-G	HET	INTERGENIC
SBS	Chr9	206254	G-A	HET	INTERGENIC
SBS	Chr9	21411549	T-A	HET	INTERGENIC
SBS	Chr9	2992485	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g06360

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	3035608	3035609	1
Deletion	Chr5	3506030	3506073	43
Deletion	Chr1	6477277	6477278	1
Deletion	Chr3	7242042	7242056	14
Deletion	Chr2	8426838	8426839	1
Deletion	Chr6	9353534	9353961	427	LOC_Os06g16390
Deletion	Chr9	13907356	13907357	1
Deletion	Chr7	14258364	14258416	52
Deletion	Chr6	14453077	14453079	2
Deletion	Chr8	14664499	14664500	1
Deletion	Chr11	15127613	15127788	175
Deletion	Chr1	15715007	15715009	2
Deletion	Chr2	21161315	21161316	1	LOC_Os02g35190
Deletion	Chr1	21540298	21540303	5
Deletion	Chr7	22889088	22889092	4
Deletion	Chr1	25167399	25167401	2
Deletion	Chr6	25429836	25429837	1
Deletion	Chr7	27176869	27176870	1
Deletion	Chr3	32247281	32247288	7
Deletion	Chr3	33189428	33189431	3	LOC_Os03g58250

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr7	13758553	13758553	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	8272032	9149052	LOC_Os06g16070
Inversion	Chr6	8381101	9147366	LOC_Os06g16070
Inversion	Chr6	8381112	9172611	LOC_Os06g16100
Inversion	Chr5	9634566	10235366

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	11802795	Chr6	9353554	LOC_Os08g19710
Translocation	Chr8	11802797	Chr6	9149030	2

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