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Mutant Information

Mutant Name	FN-174 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-174 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 46

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15491295	A-T	HOMO	INTRON
SBS	Chr1	33160571	G-T	HET	INTERGENIC
SBS	Chr1	36664882	C-T	HET	INTERGENIC
SBS	Chr10	15809183	A-G	HOMO	INTRON
SBS	Chr10	16116685	A-T	HOMO	INTERGENIC
SBS	Chr11	11974037	C-T	HOMO	INTRON
SBS	Chr11	26719842	T-A	HOMO	INTERGENIC
SBS	Chr11	26719847	C-T	HOMO	INTERGENIC
SBS	Chr11	26719853	G-C	HOMO	INTERGENIC
SBS	Chr11	7958776	T-A	HET	INTERGENIC
SBS	Chr12	12831522	A-G	HET	INTERGENIC
SBS	Chr12	17045109	G-A	HET	SYNONYMOUS_CODING
SBS	Chr2	10732543	G-A	HET	INTRON
SBS	Chr2	11535329	T-A	HET	INTERGENIC
SBS	Chr2	19522558	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g32870
SBS	Chr2	26728975	A-C	HET	INTERGENIC
SBS	Chr2	28579939	G-T	HET	INTERGENIC
SBS	Chr3	10308797	T-A	HOMO	INTERGENIC
SBS	Chr3	17511407	C-T	HET	INTRON
SBS	Chr3	25163696	T-A	HET	INTERGENIC
SBS	Chr3	28109020	G-A	HET	INTRON
SBS	Chr3	33527601	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g58900
SBS	Chr3	34825631	T-C	HET	UTR_3_PRIME
SBS	Chr3	6795013	C-A	HET	INTERGENIC
SBS	Chr4	247733	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g01320
SBS	Chr4	979258	A-G	HET	INTERGENIC
SBS	Chr5	20544677	T-A	HOMO	INTRON
SBS	Chr5	23762415	C-T	HET	SYNONYMOUS_CODING
SBS	Chr5	27450402	A-C	HET	INTRON
SBS	Chr6	17778807	A-T	HET	INTERGENIC
SBS	Chr6	17914572	A-C	HET	INTERGENIC
SBS	Chr6	19933170	C-G	HET	INTERGENIC
SBS	Chr6	26886974	C-T	HET	INTERGENIC
SBS	Chr7	12275594	T-C	HET	INTERGENIC
SBS	Chr7	1877606	C-T	HET	INTERGENIC
SBS	Chr7	20907354	T-C	HET	INTERGENIC
SBS	Chr7	21584581	C-T	HET	INTERGENIC
SBS	Chr7	8429435	C-T	HET	INTERGENIC
SBS	Chr8	18391490	G-C	HOMO	INTERGENIC
SBS	Chr8	28125574	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g44760
SBS	Chr9	10877980	G-A	HOMO	UTR_5_PRIME
SBS	Chr9	11549046	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g19290
SBS	Chr9	18124083	G-C	HET	INTERGENIC
SBS	Chr9	21572154	G-T	HET	INTERGENIC
SBS	Chr9	8211013	A-G	HOMO	INTERGENIC
SBS	Chr9	8592058	G-T	HET	INTRON

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	1401530	1401531	1
Deletion	Chr1	1630665	1630666	1
Deletion	Chr12	1693290	1693296	6
Deletion	Chr4	2603321	2603329	8	LOC_Os04g05210
Deletion	Chr5	3690296	3690345	49
Deletion	Chr5	3899215	3899220	5	LOC_Os05g07330
Deletion	Chr6	5826896	5826911	15	LOC_Os06g11110
Deletion	Chr6	9118085	9122806	4721	LOC_Os06g16030
Deletion	Chr6	9586057	9586063	6
Deletion	Chr1	9611459	9611460	1
Deletion	Chr10	9922247	9922296	49
Deletion	Chr9	14133099	14133104	5
Deletion	Chr8	14603840	14603974	134	LOC_Os08g24190
Deletion	Chr10	17475070	17475071	1
Deletion	Chr6	17553860	17553864	4
Deletion	Chr3	17572196	17572204	8
Deletion	Chr8	18173513	18173515	2
Deletion	Chr3	18747609	18747612	3
Deletion	Chr4	19149363	19149621	258	LOC_Os04g31971
Deletion	Chr6	20969322	20969334	12
Deletion	Chr11	24350191	24364022	13831	2
Deletion	Chr7	26582096	26582151	55
Deletion	Chr5	28506348	28506352	4	LOC_Os05g49710
Deletion	Chr1	29742273	29742277	4	LOC_Os01g51720
Deletion	Chr1	30045867	30045881	14

Insertions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	23351587	23351588	2
Insertion	Chr1	23745436	23745439	4
Insertion	Chr1	3318561	3318564	4
Insertion	Chr1	39804019	39804020	2
Insertion	Chr1	4807434	4807435	2
Insertion	Chr1	9437918	9437919	2
Insertion	Chr10	19038169	19038172	4
Insertion	Chr11	14529191	14529194	4
Insertion	Chr11	25224700	25224701	2
Insertion	Chr12	8085373	8085376	4
Insertion	Chr2	18025170	18025171	2
Insertion	Chr2	18371365	18371366	2
Insertion	Chr2	18480135	18480136	2
Insertion	Chr2	6995737	6995738	2
Insertion	Chr3	1109176	1109177	2
Insertion	Chr3	22281753	22281768	16	LOC_Os03g40100
Insertion	Chr3	25979098	25979105	8
Insertion	Chr3	32775225	32775227	3
Insertion	Chr4	30942942	30942945	4
Insertion	Chr4	31164146	31164147	2
Insertion	Chr5	27925865	27925866	2
Insertion	Chr5	5970091	5970092	2
Insertion	Chr6	1381929	1381932	4
Insertion	Chr6	3999411	3999412	2
Insertion	Chr7	8045906	8045909	4
Insertion	Chr8	1202959	1202963	5
Insertion	Chr8	15195584	15195595	12
Insertion	Chr8	2154182	2154183	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	59070	26995052
Inversion	Chr11	3771325	4318530
Inversion	Chr6	9122800	14958827	LOC_Os06g16030
Inversion	Chr6	26873995	26932874
Inversion	Chr6	26890063	26932873

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	10372844	Chr8	5586488	LOC_Os08g09670
Translocation	Chr10	18421005	Chr8	1127623	LOC_Os10g34540
Translocation	Chr10	19028209	Chr8	1127621	LOC_Os10g35570
Translocation	Chr7	28146925	Chr4	19149379	2

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