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Mutant Information

Mutant Name	FN-175 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-175 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 47

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10911213	C-A	HET	INTERGENIC
SBS	Chr1	10911214	T-C	HET	INTERGENIC
SBS	Chr1	10976996	T-C	HET	INTERGENIC
SBS	Chr1	10990125	C-A	HET	INTERGENIC
SBS	Chr1	11708662	G-A	HET	INTERGENIC
SBS	Chr1	17253620	C-T	HET	INTERGENIC
SBS	Chr1	19836834	G-A	HET	INTRON
SBS	Chr1	35333861	T-C	HET	INTERGENIC
SBS	Chr1	39296421	T-A	HET	UTR_3_PRIME
SBS	Chr1	8344476	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g14890
SBS	Chr10	3543713	C-A	HET	INTERGENIC
SBS	Chr10	4732797	G-A	HET	INTERGENIC
SBS	Chr10	8107673	C-T	HOMO	INTERGENIC
SBS	Chr11	14151197	G-A	HET	INTERGENIC
SBS	Chr11	21637471	C-G	HOMO	INTERGENIC
SBS	Chr11	231642	A-G	HET	UTR_3_PRIME
SBS	Chr12	5309297	A-C	HET	INTERGENIC
SBS	Chr12	9414277	A-T	HET	INTERGENIC
SBS	Chr2	1090872	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os02g02860
SBS	Chr2	1826165	T-G	HET	UTR_3_PRIME
SBS	Chr2	23166301	C-G	HOMO	INTERGENIC
SBS	Chr2	2634269	T-A	HET	INTERGENIC
SBS	Chr2	28428873	T-C	HOMO	INTERGENIC
SBS	Chr2	33444664	T-A	HOMO	INTERGENIC
SBS	Chr2	33444665	T-A	HOMO	INTERGENIC
SBS	Chr4	18647820	G-T	HET	INTERGENIC
SBS	Chr4	31289303	T-C	HET	UTR_5_PRIME
SBS	Chr4	33927516	A-T	HET	INTERGENIC
SBS	Chr4	4947892	C-T	HET	SYNONYMOUS_CODING
SBS	Chr5	11700425	C-A	HET	INTRON
SBS	Chr5	18810407	A-C	HET	INTERGENIC
SBS	Chr5	19351564	G-T	HET	SYNONYMOUS_CODING
SBS	Chr5	20720234	A-T	HOMO	INTERGENIC
SBS	Chr5	24722730	G-A	HET	INTERGENIC
SBS	Chr5	9653319	C-A	HET	SYNONYMOUS_CODING
SBS	Chr6	13315437	C-A	HET	INTRON
SBS	Chr6	8564446	G-A	HOMO	STOP_GAINED	LOC_Os06g15110
SBS	Chr7	10647379	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g17980
SBS	Chr7	14359989	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g25130
SBS	Chr7	22348933	T-A	HET	INTERGENIC
SBS	Chr7	22596805	G-A	HET	INTERGENIC
SBS	Chr7	24056222	T-G	HET	INTERGENIC
SBS	Chr7	24602081	A-G	HET	INTRON
SBS	Chr7	24641655	A-T	HOMO	INTERGENIC
SBS	Chr7	9624352	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g16430
SBS	Chr8	18808807	C-T	HOMO	INTRON
SBS	Chr8	3272385	G-A	HET	INTERGENIC

Deletions: 29

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	53040	53042	2	LOC_Os04g01060
Deletion	Chr6	344277	344286	9	LOC_Os06g01580
Deletion	Chr4	1005633	1005635	2
Deletion	Chr4	1420648	1420776	128
Deletion	Chr6	2942664	2942679	15
Deletion	Chr12	4734415	4734416	1
Deletion	Chr12	6680711	6680713	2
Deletion	Chr12	7495524	7495526	2
Deletion	Chr4	7678552	7678556	4
Deletion	Chr7	7972897	7972898	1
Deletion	Chr12	9357007	9357009	2	LOC_Os12g16350
Deletion	Chr9	10187051	10187052	1
Deletion	Chr8	11919710	11919713	3
Deletion	Chr2	13262366	13262373	7	LOC_Os02g22240
Deletion	Chr4	13568850	13568852	2	LOC_Os04g23720
Deletion	Chr10	15689868	15939803	249935	40
Deletion	Chr6	16013231	16013232	1
Deletion	Chr7	17906283	17906285	2
Deletion	Chr11	18748391	18748434	43
Deletion	Chr8	19206984	19206985	1	LOC_Os08g31090
Deletion	Chr9	19533727	19533732	5
Deletion	Chr1	21691488	21857241	165753	29
Deletion	Chr1	21794546	21794547	1
Deletion	Chr1	21847305	21847308	3
Deletion	Chr4	23014572	23014574	2
Deletion	Chr3	24965270	24965272	2
Deletion	Chr1	28500774	28500775	1
Deletion	Chr4	33783153	33783205	52
Deletion	Chr1	35226988	35226999	11

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	18655784	18655785	2
Insertion	Chr4	26538353	26538353	1

No Inversion

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	19357944	Chr6	20085140	LOC_Os10g36210
Translocation	Chr10	19357986	Chr6	20086566	2
Translocation	Chr11	23286499	Chr1	41587095

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