Search Results
| Mutant Information |
|---|
| Mutant Name | FN-176 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-176 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 29
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 4536320 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os01g09020 |
| SBS | Chr1 | 11179628 | A-G | HET | SYNONYMOUS_CODING | |
| SBS | Chr1 | 26574371 | G-C | HET | INTERGENIC | |
| SBS | Chr1 | 31956611 | C-T | HOMO | INTERGENIC | |
| SBS | Chr3 | 1511233 | C-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 9917789 | G-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 12521902 | C-T | HOMO | INTERGENIC | |
| SBS | Chr3 | 13938734 | G-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 14442444 | G-T | HOMO | INTERGENIC | |
| SBS | Chr3 | 20349860 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os03g36700 |
| SBS | Chr4 | 8031254 | G-A | HET | INTERGENIC | |
| SBS | Chr4 | 9686144 | C-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 20812365 | G-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr5 | 1576490 | C-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr5 | 9686563 | T-G | HET | INTERGENIC | |
| SBS | Chr5 | 17147960 | A-G | HET | INTERGENIC | |
| SBS | Chr5 | 19145690 | C-T | HET | INTERGENIC | |
| SBS | Chr6 | 21043591 | C-A | HET | INTERGENIC | |
| SBS | Chr6 | 23562468 | T-A | HET | INTRON | |
| SBS | Chr6 | 27232057 | T-C | HOMO | NON_SYNONYMOUS_CODING | LOC_Os06g45020 |
| SBS | Chr7 | 19009788 | T-A | HOMO | INTERGENIC | |
| SBS | Chr7 | 21952095 | A-C | HOMO | INTERGENIC | |
| SBS | Chr7 | 24069972 | C-T | HOMO | INTERGENIC | |
| SBS | Chr8 | 26046333 | T-C | HOMO | INTERGENIC | |
| SBS | Chr9 | 1449738 | A-G | HOMO | INTERGENIC | |
| SBS | Chr9 | 9774068 | G-A | HET | INTRON | |
| SBS | Chr9 | 21338043 | A-C | HET | INTRON | |
| SBS | Chr10 | 3385035 | A-G | HOMO | INTERGENIC | |
| SBS | Chr12 | 9300419 | A-G | HET | INTRON |
Deletions: 5
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 2535325 | 2535329 | 4 | |
| Deletion | Chr9 | 19295001 | 19368000 | 73000 | 12 |
| Deletion | Chr2 | 26293848 | 26293852 | 4 | |
| Deletion | Chr4 | 27462474 | 27462481 | 7 | |
| Deletion | Chr3 | 32602095 | 32602099 | 4 | LOC_Os03g57170 |
No Insertion
No Inversion
No Translocation