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Mutant Information |
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Mutant Name | FN-18 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN-18 Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 3
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 37972381 | A-G | Homo | INTERGENIC | |
SBS | Chr6 | 20882616 | A-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os06g35780 |
SBS | Chr7 | 8889394 | A-C | Homo | INTERGENIC |
Deletions: 31
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr5 | 453481 | 453501 | 20 | |
Deletion | Chr10 | 2461210 | 2461211 | 1 | |
Deletion | Chr12 | 2465857 | 2465870 | 13 | |
Deletion | Chr11 | 4734577 | 4734591 | 14 | |
Deletion | Chr10 | 5320508 | 5320509 | 1 | |
Deletion | Chr9 | 6020692 | 6020701 | 9 | |
Deletion | Chr3 | 6079419 | 6079422 | 3 | LOC_Os03g11650 |
Deletion | Chr3 | 8138307 | 8138323 | 16 | |
Deletion | Chr3 | 8204656 | 8204657 | 1 | |
Deletion | Chr3 | 10137793 | 10137798 | 5 | |
Deletion | Chr6 | 10997122 | 10997208 | 86 | |
Deletion | Chr6 | 14145699 | 14145702 | 3 | |
Deletion | Chr12 | 14509114 | 14509125 | 11 | LOC_Os12g25220 |
Deletion | Chr7 | 16175693 | 16175696 | 3 | |
Deletion | Chr8 | 16367860 | 16367873 | 13 | |
Deletion | Chr6 | 17702482 | 17702491 | 9 | |
Deletion | Chr11 | 17800526 | 17800527 | 1 | |
Deletion | Chr1 | 19164346 | 19164353 | 7 | |
Deletion | Chr5 | 20303379 | 20303386 | 7 | |
Deletion | Chr3 | 20604589 | 20604597 | 8 | LOC_Os03g37194 |
Deletion | Chr12 | 21553468 | 21553477 | 9 | |
Deletion | Chr9 | 21689475 | 21689491 | 16 | |
Deletion | Chr5 | 23070862 | 23070867 | 5 | LOC_Os05g39330 |
Deletion | Chr7 | 23446589 | 23446599 | 10 | |
Deletion | Chr7 | 23513869 | 23513870 | 1 | |
Deletion | Chr4 | 25925610 | 25925616 | 6 | |
Deletion | Chr5 | 29756382 | 29756383 | 1 | |
Deletion | Chr2 | 33952938 | 33952947 | 9 | |
Deletion | Chr3 | 35235814 | 35235818 | 4 | |
Deletion | Chr1 | 36712750 | 36712751 | 1 | |
Deletion | Chr1 | 37924010 | 37924016 | 6 |
Insertions: 28
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr8 | 7934523 | 7934523 | 1 | |
Insertion | Chr1 | 2549378 | 2549399 | 22 | |
Insertion | Chr7 | 11364199 | 11364218 | 20 | |
Insertion | Chr8 | 1209775 | 1209784 | 10 | |
Insertion | Chr6 | 28120293 | 28120298 | 6 | |
Insertion | Chr7 | 24980248 | 24980252 | 5 | |
Insertion | Chr11 | 6888331 | 6888334 | 4 | LOC_Os11g12340 |
Insertion | Chr2 | 10135304 | 10135307 | 4 | LOC_Os02g17620 |
Insertion | Chr4 | 368582 | 368585 | 4 | |
Insertion | Chr8 | 20486314 | 20486317 | 4 | |
Insertion | Chr2 | 15314956 | 15314958 | 3 | |
Insertion | Chr7 | 12793853 | 12793855 | 3 | |
Insertion | Chr1 | 2713653 | 2713654 | 2 | |
Insertion | Chr11 | 7254958 | 7254959 | 2 | |
Insertion | Chr2 | 7930775 | 7930776 | 2 | |
Insertion | Chr2 | 9518323 | 9518324 | 2 | |
Insertion | Chr3 | 12114390 | 12114391 | 2 | |
Insertion | Chr5 | 18832874 | 18832875 | 2 | |
Insertion | Chr5 | 19049178 | 19049179 | 2 | |
Insertion | Chr7 | 22930902 | 22930903 | 2 | LOC_Os07g38240 |
Insertion | Chr7 | 24313236 | 24313237 | 2 | |
Insertion | Chr7 | 24573851 | 24573852 | 2 | |
Insertion | Chr7 | 29661649 | 29661650 | 2 | |
Insertion | Chr8 | 19334895 | 19334896 | 2 | |
Insertion | Chr1 | 43059641 | 43059641 | 1 | |
Insertion | Chr10 | 14416901 | 14416901 | 1 | |
Insertion | Chr4 | 34913717 | 34913717 | 1 | |
Insertion | Chr6 | 11217514 | 11217514 | 1 |
Inversions: 3
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr3 | 4894372 | 29185531 | LOC_Os03g51050 |
Inversion | Chr2 | 17021296 | 17198424 | LOC_Os02g29040 |
Inversion | Chr5 | 27599719 | 28003018 |
Translocations: 4
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr6 | 14285625 | Chr2 | 3922470 | 2 |
Translocation | Chr3 | 15560364 | Chr2 | 17199004 | LOC_Os02g29040 |
Translocation | Chr3 | 15560365 | Chr2 | 17198428 | LOC_Os02g29040 |
Translocation | Chr11 | 21779399 | Chr6 | 13869717 |