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Mutant Information

Mutant Name	FN-181 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-181 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 45

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1431755	T-A	HET	INTERGENIC
SBS	Chr1	14460269	A-G	HET	SYNONYMOUS_CODING
SBS	Chr1	14559156	C-T	HET	SYNONYMOUS_CODING
SBS	Chr1	15043653	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g27000
SBS	Chr1	3085177	A-G	HET	INTERGENIC
SBS	Chr1	33454440	G-T	HOMO	INTRON
SBS	Chr10	13331810	G-A	HET	INTERGENIC
SBS	Chr11	1627253	A-G	HOMO	INTRON
SBS	Chr11	27227555	C-T	HET	INTERGENIC
SBS	Chr12	11345655	T-C	HET	INTERGENIC
SBS	Chr12	4420677	A-C	HOMO	INTERGENIC
SBS	Chr12	7697343	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os12g13670
SBS	Chr12	7955353	T-C	HET	INTRON
SBS	Chr2	12564491	C-T	HET	INTERGENIC
SBS	Chr2	12848142	A-G	HET	INTRON
SBS	Chr2	27054360	A-C	HOMO	INTRON
SBS	Chr2	33649187	A-T	HET	INTERGENIC
SBS	Chr2	33649188	A-T	HET	INTERGENIC
SBS	Chr2	4134492	C-T	HET	INTERGENIC
SBS	Chr2	7728039	T-A	HET	INTERGENIC
SBS	Chr3	20575485	T-C	HET	INTRON
SBS	Chr3	20661411	C-T	HOMO	INTERGENIC
SBS	Chr3	22627252	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g40690
SBS	Chr3	23251196	G-A	HET	INTERGENIC
SBS	Chr3	29137379	C-A	HET	INTERGENIC
SBS	Chr3	29395258	G-A	HOMO	INTERGENIC
SBS	Chr3	35903866	A-T	HOMO	INTERGENIC
SBS	Chr4	1387689	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g03250
SBS	Chr4	27648631	G-C	HET	INTERGENIC
SBS	Chr4	8384154	G-A	HET	INTRON
SBS	Chr5	10582488	T-G	HET	INTERGENIC
SBS	Chr5	18483109	G-T	HET	INTERGENIC
SBS	Chr5	23940920	G-A	HET	INTRON
SBS	Chr5	9580772	G-A	HET	INTERGENIC
SBS	Chr6	270727	C-T	HET	INTRON
SBS	Chr7	10475206	C-T	HET	INTERGENIC
SBS	Chr7	1233290	T-C	HET	INTRON
SBS	Chr7	18234829	C-T	HOMO	INTERGENIC
SBS	Chr7	25680276	A-C	HET	INTERGENIC
SBS	Chr7	4750969	C-T	HET	SYNONYMOUS_CODING
SBS	Chr7	9140633	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g15740
SBS	Chr8	3837447	G-T	HET	INTERGENIC
SBS	Chr9	3132341	G-T	HET	STOP_GAINED	LOC_Os09g06590
SBS	Chr9	5353288	T-A	HET	INTERGENIC
SBS	Chr9	6221996	T-A	HET	SYNONYMOUS_CODING

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	8370442	8370447	5	LOC_Os08g13960
Deletion	Chr8	15008001	15040000	32000	7
Deletion	Chr4	16097357	16097362	5
Deletion	Chr3	19533816	19533817	1
Deletion	Chr8	19888969	19888970	1
Deletion	Chr5	20447119	20447120	1
Deletion	Chr9	22176589	22176596	7	LOC_Os09g38550
Deletion	Chr8	23269941	23269943	2
Deletion	Chr1	23548076	23548362	286	LOC_Os01g41590
Deletion	Chr11	24087075	24087104	29
Deletion	Chr7	26435511	26435520	9
Deletion	Chr4	26748000	26748003	3	LOC_Os04g45270
Deletion	Chr2	29894260	29894263	3	LOC_Os02g48870
Deletion	Chr1	39374001	39384000	10000	3

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	39916646	39916649	4
Insertion	Chr2	17454917	17454918	2	LOC_Os02g29380
Insertion	Chr3	2462821	2462821	1
Insertion	Chr4	27851674	27851674	1
Insertion	Chr5	17505271	17505272	2

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	17427221	17438097	LOC_Os04g29350
Inversion	Chr4	17438115	17445586
Inversion	Chr4	27222856	27425251	2
Inversion	Chr5	27779856	27869684	2

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	7988832	Chr4	19655126	LOC_Os04g32620

Tandem duplications: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Tandem Duplication	Chr3	36136483	36140436	3953

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