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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3393632	G-A	HET	INTERGENIC
SBS	Chr1	17086541	G-A	HET	INTERGENIC
SBS	Chr2	1220874	G-A	HET	INTERGENIC
SBS	Chr2	6303182	G-A	HET	SYNONYMOUS_CODING
SBS	Chr2	21064772	T-A	HET	INTRON
SBS	Chr2	23632209	G-T	HET	INTERGENIC
SBS	Chr2	32268423	C-G	HET	INTERGENIC
SBS	Chr3	30067433	C-T	HET	INTRON
SBS	Chr4	7024148	A-G	HET	INTERGENIC
SBS	Chr4	11790849	T-C	HET	INTRON
SBS	Chr4	26084587	C-T	HET	INTERGENIC
SBS	Chr4	28675594	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g48170
SBS	Chr4	29207566	G-A	HET	INTERGENIC
SBS	Chr5	9847410	C-T	HOMO	INTERGENIC
SBS	Chr5	23848104	T-C	HET	SYNONYMOUS_CODING
SBS	Chr5	29420973	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g51290
SBS	Chr6	4091682	T-C	HOMO	SYNONYMOUS_CODING
SBS	Chr6	23401210	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g39410
SBS	Chr6	23401211	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os06g39410
SBS	Chr6	27183136	C-T	HET	INTERGENIC
SBS	Chr6	30436203	G-A	HOMO	INTRON
SBS	Chr7	7313655	C-A	HET	UTR_5_PRIME
SBS	Chr7	18422384	G-C	HET	INTERGENIC
SBS	Chr7	20783800	G-A	HOMO	INTRON
SBS	Chr8	15495277	C-A	HET	INTRON
SBS	Chr8	19011249	T-C	HET	INTERGENIC
SBS	Chr9	1848833	C-T	HET	INTERGENIC
SBS	Chr9	11169656	G-T	HET	INTERGENIC
SBS	Chr9	15668681	T-A	HOMO	INTERGENIC
SBS	Chr9	17950594	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g29510
SBS	Chr10	15774479	G-A	HET	INTERGENIC
SBS	Chr11	712993	T-A	HET	INTERGENIC
SBS	Chr11	17135504	G-A	HET	INTERGENIC

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	1598456	1598461	5
Deletion	Chr10	2179089	2179091	2	LOC_Os10g04580
Deletion	Chr11	3997846	3997853	7
Deletion	Chr7	8371996	8372012	16
Deletion	Chr1	9345127	9345134	7	LOC_Os01g16460
Deletion	Chr4	12910884	12910885	1
Deletion	Chr11	13631614	13631623	9
Deletion	Chr4	16044035	16044036	1
Deletion	Chr4	16955631	16955638	7
Deletion	Chr3	17124793	17124801	8
Deletion	Chr11	20071093	20071094	1	LOC_Os11g34270
Deletion	Chr2	20121298	20121299	1
Deletion	Chr4	24401389	24401392	3	LOC_Os04g41140
Deletion	Chr1	25067377	25067378	1	LOC_Os01g43750
Deletion	Chr1	27873533	27873536	3
Deletion	Chr4	32176641	32176646	5	LOC_Os04g53994
Deletion	Chr1	40526562	40526574	12

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	42774203	42774204	2
Insertion	Chr2	25683955	25683956	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	25064761	25250363
Inversion	Chr1	25064787	25250370

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	31179741	Chr1	1717867	LOC_Os04g52450

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