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Mutant Information

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	31045966	C-T	HOMO	INTERGENIC
SBS	Chr1	36620280	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g63180
SBS	Chr10	12770940	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g24830
SBS	Chr10	21444894	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g40040
SBS	Chr12	10271759	G-T	HOMO	INTERGENIC
SBS	Chr2	15090141	A-G	HET	INTRON
SBS	Chr2	15652405	G-A	HET	INTRON
SBS	Chr2	20137359	C-T	HET	INTRON
SBS	Chr2	29685399	T-G	HET	INTRON
SBS	Chr2	35132292	A-T	HET	INTERGENIC
SBS	Chr2	978353	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g02660
SBS	Chr2	978354	G-T	HOMO	STOP_GAINED	LOC_Os02g02660
SBS	Chr3	1941734	G-A	HET	INTERGENIC
SBS	Chr3	29287701	A-T	HET	INTERGENIC
SBS	Chr3	30906612	A-G	HET	INTRON
SBS	Chr4	15230289	G-A	HET	INTERGENIC
SBS	Chr4	22471492	T-A	HOMO	INTERGENIC
SBS	Chr4	3709760	C-T	HOMO	INTERGENIC
SBS	Chr5	16671997	A-T	HET	INTERGENIC
SBS	Chr5	9380481	G-A	HOMO	INTERGENIC
SBS	Chr6	16884905	T-A	HET	INTERGENIC
SBS	Chr7	11953069	C-T	HET	SYNONYMOUS_CODING
SBS	Chr7	12454205	T-C	HET	INTRON
SBS	Chr7	24692276	T-C	HET	INTERGENIC
SBS	Chr7	6051024	A-G	HET	INTERGENIC
SBS	Chr8	9711615	A-G	HET	INTERGENIC
SBS	Chr9	1377531	G-A	HOMO	INTERGENIC
SBS	Chr9	5495450	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g10080

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	1610991	1611006	15	LOC_Os11g03990
Deletion	Chr7	2969374	2969381	7	LOC_Os07g06120
Deletion	Chr1	4024798	4024810	12
Deletion	Chr6	6835625	6835626	1
Deletion	Chr9	7021966	7021993	27
Deletion	Chr6	7919775	7919799	24
Deletion	Chr10	8047226	8047227	1
Deletion	Chr7	9070906	9070907	1
Deletion	Chr6	11537403	11537404	1	LOC_Os06g20120
Deletion	Chr10	15921102	15921116	14	LOC_Os10g30600
Deletion	Chr1	17940936	17940937	1
Deletion	Chr10	18299352	18299355	3	LOC_Os10g34310
Deletion	Chr4	22111848	22111855	7
Deletion	Chr5	23670447	23670454	7
Deletion	Chr11	24070436	24070438	2
Deletion	Chr3	25379193	25379210	17
Deletion	Chr8	25431929	25431931	2
Deletion	Chr3	27213914	27239560	25646	8
Deletion	Chr3	27550363	27550376	13
Deletion	Chr2	29854001	30122000	268000	49
Deletion	Chr2	30109600	30138579	28979	6
Deletion	Chr4	35074674	35074677	3	LOC_Os04g58960
Deletion	Chr1	39878436	39878438	2

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	22761873	22761875	3
Insertion	Chr11	12560722	12560722	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	3952285	4017068	LOC_Os03g07780

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	3952289	Chr2	29685375	2
Translocation	Chr3	4517102	Chr2	29854343	2

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