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Mutant Information

Variant Information

Single base substitutions: 37

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24185770	G-A	HOMO	INTERGENIC
SBS	Chr1	33861947	C-T	HET	INTERGENIC
SBS	Chr10	11362695	G-A	HET	UTR_3_PRIME
SBS	Chr10	12773936	C-A	HET	INTERGENIC
SBS	Chr10	6871052	C-T	HET	INTRON
SBS	Chr10	754653	G-A	HET	SYNONYMOUS_CODING
SBS	Chr10	8621869	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g17170
SBS	Chr10	8774742	T-C	HET	INTERGENIC
SBS	Chr11	14623064	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g25640
SBS	Chr12	13091663	G-A	HET	INTERGENIC
SBS	Chr12	21469948	G-A	HET	INTERGENIC
SBS	Chr12	24185335	C-G	HET	INTRON
SBS	Chr2	22818377	C-T	HET	INTERGENIC
SBS	Chr2	9529558	C-T	HET	SYNONYMOUS_CODING
SBS	Chr3	10312273	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g18390
SBS	Chr3	10312274	G-T	HOMO	SYNONYMOUS_CODING
SBS	Chr3	1456730	G-A	HOMO	INTERGENIC
SBS	Chr3	19955544	G-T	HOMO	INTRON
SBS	Chr3	21842950	G-A	HET	INTRON
SBS	Chr3	24694266	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g43970
SBS	Chr3	32903201	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g57730
SBS	Chr3	32903202	C-T	HET	SYNONYMOUS_CODING
SBS	Chr3	5788731	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g11240
SBS	Chr4	26404851	A-G	HOMO	INTERGENIC
SBS	Chr6	11497492	A-T	HET	INTERGENIC
SBS	Chr6	18139671	G-A	HET	INTERGENIC
SBS	Chr6	22276362	T-A	HET	INTERGENIC
SBS	Chr6	24541450	C-T	HET	INTERGENIC
SBS	Chr6	30983670	C-A	HET	INTERGENIC
SBS	Chr6	7557626	C-T	HET	INTRON
SBS	Chr7	24115330	C-T	HOMO	INTERGENIC
SBS	Chr7	8486855	A-T	HET	INTERGENIC
SBS	Chr8	1544902	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g03330
SBS	Chr8	26424817	G-A	HOMO	INTERGENIC
SBS	Chr9	6183955	G-A	HET	INTERGENIC
SBS	Chr9	7034290	A-T	HET	INTERGENIC
SBS	Chr9	7920262	T-A	HOMO	INTRON

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	695706	695727	21	LOC_Os06g02220
Deletion	Chr12	2584771	2584780	9
Deletion	Chr4	4194015	4194038	23
Deletion	Chr9	5148209	5148221	12
Deletion	Chr12	7451050	7451054	4
Deletion	Chr12	8845293	8845294	1
Deletion	Chr8	9977548	9977554	6
Deletion	Chr1	11463333	11463345	12	LOC_Os01g20160
Deletion	Chr9	11627523	11627529	6
Deletion	Chr10	13606349	13606351	2
Deletion	Chr6	13920942	13920943	1
Deletion	Chr12	14056630	14109989	53359	8
Deletion	Chr2	16052953	16052959	6
Deletion	Chr9	17277401	17277418	17
Deletion	Chr3	21312818	21312928	110
Deletion	Chr12	21927149	21927171	22
Deletion	Chr6	24428446	24429931	1485
Deletion	Chr4	24766482	24766486	4	LOC_Os04g41810
Deletion	Chr4	27810472	27810477	5
Deletion	Chr2	29916609	29916618	9

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	16289691	16289692	2
Insertion	Chr3	25647201	25647202	2

No Inversion

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	21875887	Chr8	10599660	LOC_Os12g35895
Translocation	Chr6	24428455	Chr5	24335674	LOC_Os05g41560
Translocation	Chr6	24429898	Chr5	24335658	LOC_Os05g41560

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