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| Mutant Information |
|---|
| Mutant Name | FN-186 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-186 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 23
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr10 | 19840723 | A-G | HOMO | UTR_3_PRIME | |
| SBS | Chr11 | 7978057 | A-G | HET | INTERGENIC | |
| SBS | Chr12 | 14256173 | G-C | HET | INTERGENIC | |
| SBS | Chr12 | 14882468 | T-G | HET | INTERGENIC | |
| SBS | Chr12 | 16754004 | C-T | HET | INTERGENIC | |
| SBS | Chr2 | 11336500 | T-C | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr2 | 11561232 | C-T | HET | INTERGENIC | |
| SBS | Chr2 | 24702758 | C-T | HET | INTERGENIC | |
| SBS | Chr2 | 32171202 | G-A | HET | INTERGENIC | |
| SBS | Chr2 | 4118263 | A-T | HET | INTRON | |
| SBS | Chr3 | 5822987 | G-T | HET | INTERGENIC | |
| SBS | Chr3 | 7923264 | G-A | HET | INTERGENIC | |
| SBS | Chr6 | 23011748 | G-A | HET | INTERGENIC | |
| SBS | Chr6 | 28300325 | C-T | HET | INTERGENIC | |
| SBS | Chr6 | 5476146 | G-A | HOMO | INTERGENIC | |
| SBS | Chr7 | 11235605 | G-A | HET | INTERGENIC | |
| SBS | Chr8 | 11318299 | G-A | HET | INTERGENIC | |
| SBS | Chr8 | 24381402 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os08g38560 |
| SBS | Chr8 | 6074954 | T-G | HOMO | NON_SYNONYMOUS_CODING | LOC_Os08g10360 |
| SBS | Chr9 | 1211156 | A-C | HOMO | UTR_5_PRIME | |
| SBS | Chr9 | 13496293 | G-T | HET | INTERGENIC | |
| SBS | Chr9 | 13496294 | A-T | HET | INTERGENIC | |
| SBS | Chr9 | 2728737 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os09g05070 |
Deletions: 15
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 1211152 | 1211153 | 1 | LOC_Os09g02690 |
| Deletion | Chr5 | 1289195 | 1289197 | 2 | |
| Deletion | Chr9 | 3506231 | 3506243 | 12 | |
| Deletion | Chr7 | 3821428 | 3821432 | 4 | |
| Deletion | Chr9 | 5128016 | 5128025 | 9 | |
| Deletion | Chr10 | 5320508 | 5320509 | 1 | |
| Deletion | Chr2 | 6381658 | 6381667 | 9 | |
| Deletion | Chr2 | 10074128 | 10074129 | 1 | |
| Deletion | Chr11 | 14326954 | 14326958 | 4 | |
| Deletion | Chr12 | 17039381 | 17039390 | 9 | |
| Deletion | Chr10 | 19253058 | 19253068 | 10 | |
| Deletion | Chr1 | 21933309 | 21933313 | 4 | LOC_Os01g39010 |
| Deletion | Chr4 | 27285735 | 27285736 | 1 | |
| Deletion | Chr2 | 34247607 | 34247614 | 7 | |
| Deletion | Chr1 | 39197105 | 39197112 | 7 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 903684 | 903685 | 2 | |
| Insertion | Chr6 | 28033279 | 28033279 | 1 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr8 | 11779960 | 12708734 | |
| Inversion | Chr8 | 11779973 | 12708737 |
No Translocation