Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN-188 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-188 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 29
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 25369840 | C-T | HOMO | INTRON | |
| SBS | Chr10 | 22524143 | T-C | HET | INTRON | |
| SBS | Chr11 | 13285391 | G-A | HET | INTERGENIC | |
| SBS | Chr11 | 21174328 | G-T | HET | INTERGENIC | |
| SBS | Chr11 | 21906619 | C-T | HET | INTRON | |
| SBS | Chr11 | 22280093 | C-A | HET | INTRON | |
| SBS | Chr11 | 23970129 | G-A | HET | INTERGENIC | |
| SBS | Chr11 | 3999945 | A-T | HOMO | INTERGENIC | |
| SBS | Chr12 | 10583626 | G-A | HET | INTERGENIC | |
| SBS | Chr12 | 21853337 | C-A | HET | INTERGENIC | |
| SBS | Chr12 | 2814574 | G-T | HET | INTERGENIC | |
| SBS | Chr12 | 4288086 | A-G | HET | INTRON | |
| SBS | Chr2 | 27156125 | A-G | HET | INTERGENIC | |
| SBS | Chr3 | 15304566 | G-A | HOMO | INTRON | |
| SBS | Chr4 | 13175106 | C-T | HET | INTERGENIC | |
| SBS | Chr4 | 21241280 | G-T | HET | INTRON | |
| SBS | Chr4 | 3029269 | A-G | HOMO | INTRON | |
| SBS | Chr4 | 443342 | A-C | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr5 | 10423712 | G-C | HET | INTERGENIC | |
| SBS | Chr5 | 13604792 | G-A | HET | INTERGENIC | |
| SBS | Chr5 | 3213034 | C-T | HOMO | INTRON | |
| SBS | Chr6 | 22084575 | A-G | HET | INTERGENIC | |
| SBS | Chr7 | 12282728 | G-A | HOMO | INTERGENIC | |
| SBS | Chr8 | 12628577 | G-A | HET | INTRON | |
| SBS | Chr8 | 1407807 | T-A | HET | INTERGENIC | |
| SBS | Chr8 | 19484464 | A-T | HET | INTERGENIC | |
| SBS | Chr8 | 7224333 | A-G | HET | INTERGENIC | |
| SBS | Chr9 | 19832128 | T-C | HET | INTERGENIC | |
| SBS | Chr9 | 4158519 | G-A | HET | INTERGENIC |
Deletions: 22
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 815353 | 816012 | 659 | |
| Deletion | Chr7 | 1187253 | 1187254 | 1 | |
| Deletion | Chr9 | 1561919 | 1561937 | 18 | |
| Deletion | Chr8 | 2566001 | 2627000 | 61000 | 9 |
| Deletion | Chr11 | 5677400 | 5677403 | 3 | |
| Deletion | Chr11 | 5792859 | 5792862 | 3 | |
| Deletion | Chr4 | 6273686 | 6273690 | 4 | |
| Deletion | Chr9 | 7502753 | 7502804 | 51 | |
| Deletion | Chr11 | 7731082 | 7731096 | 14 | |
| Deletion | Chr9 | 8197337 | 8199132 | 1795 | LOC_Os09g13930 |
| Deletion | Chr2 | 12743804 | 12743805 | 1 | |
| Deletion | Chr3 | 14642870 | 14642871 | 1 | LOC_Os03g25590 |
| Deletion | Chr8 | 15009001 | 15039000 | 30000 | 7 |
| Deletion | Chr11 | 15939331 | 15939335 | 4 | |
| Deletion | Chr5 | 16385107 | 16385115 | 8 | |
| Deletion | Chr9 | 18996120 | 18996129 | 9 | |
| Deletion | Chr11 | 20377307 | 20377308 | 1 | |
| Deletion | Chr6 | 21962018 | 21962019 | 1 | |
| Deletion | Chr2 | 24850158 | 24850159 | 1 | |
| Deletion | Chr2 | 28478255 | 28478298 | 43 | |
| Deletion | Chr2 | 35474737 | 35474757 | 20 | |
| Deletion | Chr1 | 39020536 | 39020537 | 1 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 20711488 | 20711489 | 2 | |
| Insertion | Chr2 | 26750362 | 26750362 | 1 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr3 | 5633858 | 5863945 | |
| Inversion | Chr3 | 5633875 | 5863950 |
Translocations: 1
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 815361 | Chr5 | 7434263 | LOC_Os05g13390 |