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Mutant Information

Mutant Name	FN-189 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-189 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 48

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10696927	C-T	HOMO	INTERGENIC
SBS	Chr1	16569387	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g29560
SBS	Chr1	31847859	C-T	HET	INTERGENIC
SBS	Chr1	34598488	A-G	HET	INTRON
SBS	Chr1	38111373	C-T	HET	INTERGENIC
SBS	Chr1	38111374	A-T	HET	INTERGENIC
SBS	Chr1	7264737	C-T	HET	INTERGENIC
SBS	Chr10	20541353	T-A	HET	INTERGENIC
SBS	Chr10	21165216	T-A	HET	INTERGENIC
SBS	Chr11	10294592	C-G	HOMO	INTERGENIC
SBS	Chr11	18323099	C-A	HET	INTERGENIC
SBS	Chr11	3067878	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g06380
SBS	Chr11	6915677	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr12	25929515	C-T	HET	INTERGENIC
SBS	Chr12	4942168	C-T	HET	INTERGENIC
SBS	Chr12	928467	A-T	HET	INTERGENIC
SBS	Chr2	27524755	A-T	HET	INTERGENIC
SBS	Chr3	25605571	G-A	HET	INTERGENIC
SBS	Chr3	28200544	C-A	HET	INTERGENIC
SBS	Chr3	9045918	C-T	HET	INTERGENIC
SBS	Chr4	1653038	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g03740
SBS	Chr4	17171017	C-T	HET	INTERGENIC
SBS	Chr4	19719919	G-A	HET	INTERGENIC
SBS	Chr4	21381342	T-C	HOMO	INTRON
SBS	Chr4	30221149	T-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g51050
SBS	Chr4	32063884	G-A	HOMO	UTR_5_PRIME
SBS	Chr4	34349722	A-G	HET	INTRON
SBS	Chr4	9513447	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g17370
SBS	Chr5	1982016	C-T	HOMO	INTERGENIC
SBS	Chr5	23660510	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g40270
SBS	Chr5	4794471	C-T	HOMO	INTERGENIC
SBS	Chr5	5244113	C-T	HOMO	INTRON
SBS	Chr6	24180715	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr7	10900669	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g18410
SBS	Chr7	12962864	C-T	HOMO	INTERGENIC
SBS	Chr7	22710315	G-A	HOMO	INTERGENIC
SBS	Chr7	28169912	G-A	HET	INTERGENIC
SBS	Chr7	8914668	G-T	HET	INTERGENIC
SBS	Chr8	11186889	A-G	HET	INTERGENIC
SBS	Chr8	18120331	T-C	HET	INTERGENIC
SBS	Chr8	21396007	C-G	HET	INTERGENIC
SBS	Chr8	5377270	A-G	HET	INTERGENIC
SBS	Chr8	5762893	C-A	HET	INTERGENIC
SBS	Chr8	7516616	T-C	HOMO	INTERGENIC
SBS	Chr9	16816762	A-T	HOMO	INTERGENIC
SBS	Chr9	19382949	A-G	HET	INTERGENIC
SBS	Chr9	20330377	A-T	HET	UTR_3_PRIME
SBS	Chr9	22594118	G-A	HOMO	INTERGENIC

Deletions: 32

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	649340	649348	8	LOC_Os03g02040
Deletion	Chr6	1550027	1550030	3
Deletion	Chr1	1564742	1564744	2	LOC_Os01g03740
Deletion	Chr6	1803642	1803643	1
Deletion	Chr2	1830779	1830780	1
Deletion	Chr5	1852687	1852691	4
Deletion	Chr1	2846423	2846425	2
Deletion	Chr7	3288736	3288737	1	LOC_Os07g06740
Deletion	Chr5	4287299	4287308	9
Deletion	Chr4	4691426	4691436	10
Deletion	Chr11	4788573	4788581	8	LOC_Os11g09010
Deletion	Chr10	5232045	5232047	2
Deletion	Chr4	5657366	5657367	1
Deletion	Chr6	14302284	14302285	1
Deletion	Chr7	14513856	14513859	3
Deletion	Chr7	14689240	14689248	8
Deletion	Chr9	15745605	15745607	2
Deletion	Chr11	16958187	16958188	1
Deletion	Chr12	20339543	20339546	3	LOC_Os12g33690
Deletion	Chr10	20616906	20616918	12	LOC_Os10g38690
Deletion	Chr9	21657901	21657903	2	LOC_Os09g37580
Deletion	Chr6	21882667	22079030	196363	28
Deletion	Chr5	22693633	22693634	1
Deletion	Chr2	27426216	27427277	1061	LOC_Os02g45180
Deletion	Chr3	28382264	28382288	24
Deletion	Chr3	28787358	28787359	1
Deletion	Chr1	29711023	29711025	2
Deletion	Chr4	29778267	29778275	8	LOC_Os04g49930
Deletion	Chr4	31857468	31857475	7	LOC_Os04g53496
Deletion	Chr4	34901963	34901964	1	LOC_Os04g58700
Deletion	Chr1	38109618	38110909	1291
Deletion	Chr1	38547866	38549191	1325

Insertions: 18

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	23909458	23909463	6
Insertion	Chr10	21194276	21194277	2
Insertion	Chr10	2238013	2238014	2
Insertion	Chr11	22909970	22909976	7
Insertion	Chr11	27467375	27467377	3
Insertion	Chr11	7800947	7800947	1
Insertion	Chr12	24620953	24620970	18
Insertion	Chr2	18541224	18541243	20
Insertion	Chr4	28175908	28175911	4
Insertion	Chr4	32200739	32200740	2
Insertion	Chr5	17204977	17204996	20
Insertion	Chr5	21674373	21674374	2
Insertion	Chr5	5617295	5617295	1
Insertion	Chr6	24037839	24037842	4
Insertion	Chr6	4492630	4492632	3
Insertion	Chr8	24213433	24213436	4
Insertion	Chr8	9212042	9212042	1
Insertion	Chr9	22312981	22312984	4

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	159893	223105
Inversion	Chr2	24959736	24993385	2

No Translocation

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