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| Mutant Information |
|---|
| Mutant Name | FN-19 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-19 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 9
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 24350603 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 1191950 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr11 | 1586339 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 1443008 | A-T | Homo | INTRON | |
| SBS | Chr12 | 26478273 | C-T | Homo | INTRON | |
| SBS | Chr4 | 13404903 | T-G | Homo | INTERGENIC | |
| SBS | Chr5 | 16153104 | A-T | Homo | INTERGENIC | |
| SBS | Chr5 | 16153105 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 4762520 | C-T | Homo | SYNONYMOUS_CODING |
Deletions: 16
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 2046186 | 2046189 | 3 | |
| Deletion | Chr1 | 4695001 | 4695009 | 8 | |
| Deletion | Chr1 | 5039874 | 5039877 | 3 | |
| Deletion | Chr4 | 11745433 | 11745440 | 7 | |
| Deletion | Chr6 | 12365001 | 12405000 | 40000 | 7 |
| Deletion | Chr6 | 18121443 | 18121444 | 1 | |
| Deletion | Chr6 | 20092948 | 20092956 | 8 | |
| Deletion | Chr6 | 21617371 | 21617386 | 15 | |
| Deletion | Chr8 | 21706161 | 21706168 | 7 | |
| Deletion | Chr11 | 21878273 | 21878286 | 13 | |
| Deletion | Chr11 | 22930395 | 22930396 | 1 | |
| Deletion | Chr8 | 23554502 | 23554510 | 8 | |
| Deletion | Chr7 | 23843604 | 23843621 | 17 | LOC_Os07g39800 |
| Deletion | Chr8 | 26406219 | 26406220 | 1 | |
| Deletion | Chr6 | 28455241 | 28455242 | 1 | |
| Deletion | Chr1 | 40036669 | 40036675 | 6 | LOC_Os01g68900 |
No Insertion
No Inversion
No Translocation