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Mutant Information

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18519106	C-T	HET	INTERGENIC
SBS	Chr10	11929264	G-A	HET	INTERGENIC
SBS	Chr10	16866361	A-T	HET	INTERGENIC
SBS	Chr11	21482698	A-T	HET	INTRON
SBS	Chr12	11344789	T-G	HET	INTERGENIC
SBS	Chr3	16839616	T-A	HET	INTRON
SBS	Chr3	2737268	G-A	HET	INTERGENIC
SBS	Chr3	32495515	G-T	HET	INTERGENIC
SBS	Chr4	13471933	G-C	HOMO	INTERGENIC
SBS	Chr4	135640	C-G	HOMO	INTERGENIC
SBS	Chr4	7333035	C-T	HOMO	INTRON
SBS	Chr5	19985030	C-A	HET	INTRON
SBS	Chr5	5305234	C-T	HET	INTERGENIC
SBS	Chr5	5305235	A-T	HET	INTERGENIC
SBS	Chr5	9969467	G-C	HET	INTERGENIC
SBS	Chr6	8562372	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g15100
SBS	Chr7	10784983	G-A	HET	SYNONYMOUS_CODING
SBS	Chr7	17923713	T-C	HET	INTRON
SBS	Chr7	28582309	A-G	HET	INTERGENIC
SBS	Chr8	1964930	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g04050
SBS	Chr8	25534117	C-T	HET	INTERGENIC
SBS	Chr8	6757349	G-A	HET	INTERGENIC
SBS	Chr9	6710614	T-A	HET	INTERGENIC
SBS	Chr9	6727422	T-G	HET	INTERGENIC

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	510156	510158	2
Deletion	Chr1	1871798	1871799	1
Deletion	Chr12	2717374	2717377	3
Deletion	Chr5	3148680	3149218	538
Deletion	Chr9	4533842	4533850	8
Deletion	Chr10	4876423	4876434	11
Deletion	Chr10	5165512	5165527	15
Deletion	Chr9	6962473	6962474	1
Deletion	Chr2	7025067	7025079	12	LOC_Os02g13180
Deletion	Chr5	13186900	13186904	4
Deletion	Chr9	15400893	15400895	2
Deletion	Chr3	16414581	16414598	17
Deletion	Chr8	17833224	17833225	1
Deletion	Chr10	20183677	20183687	10	LOC_Os10g37720
Deletion	Chr11	21297175	21297212	37
Deletion	Chr4	22082517	22082518	1
Deletion	Chr8	26816639	26816665	26
Deletion	Chr1	27111286	27111290	4
Deletion	Chr7	27240708	27240709	1
Deletion	Chr2	27921312	27921314	2
Deletion	Chr1	30348021	30348022	1	LOC_Os01g52750
Deletion	Chr3	30370453	30370456	3

Insertions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	21528817	21528820	4
Insertion	Chr1	30600695	30600695	1
Insertion	Chr1	40482421	40482423	3
Insertion	Chr10	15203369	15203370	2
Insertion	Chr11	1623145	1623146	2
Insertion	Chr11	19595026	19595027	2
Insertion	Chr11	26216523	26216524	2
Insertion	Chr11	2764733	2764735	3	LOC_Os11g05880
Insertion	Chr11	7829346	7829347	2
Insertion	Chr12	6734503	6734517	15
Insertion	Chr2	16777344	16777345	2
Insertion	Chr2	24146279	24146282	4
Insertion	Chr2	28273511	28273516	6	LOC_Os02g46410
Insertion	Chr2	7110296	7110296	1
Insertion	Chr4	23528527	23528528	2
Insertion	Chr5	4684615	4684615	1
Insertion	Chr6	4300073	4300076	4
Insertion	Chr6	7276874	7276879	6
Insertion	Chr7	16366107	16366109	3
Insertion	Chr7	8497561	8497561	1
Insertion	Chr9	8981681	8981682	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	32299	520587	2
Inversion	Chr4	32311	520606	2
Inversion	Chr2	7242953	7271480

No Translocation

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