Search Results
| Mutant Information |
|---|
| Mutant Name | FN-193 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-193 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 23
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 27574330 | C-A | HOMO | INTERGENIC | |
| SBS | Chr1 | 33737114 | T-A | HET | INTERGENIC | |
| SBS | Chr1 | 38044835 | G-A | HOMO | INTERGENIC | |
| SBS | Chr2 | 19128115 | G-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 7695492 | C-T | HET | INTERGENIC | |
| SBS | Chr3 | 20420280 | A-G | HET | INTERGENIC | |
| SBS | Chr3 | 27333853 | C-A | HET | INTERGENIC | |
| SBS | Chr4 | 11344130 | C-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 21428954 | G-A | HET | INTERGENIC | |
| SBS | Chr4 | 23277880 | A-G | HOMO | INTERGENIC | |
| SBS | Chr4 | 30323370 | G-T | HET | INTERGENIC | |
| SBS | Chr5 | 17602417 | T-A | HOMO | INTERGENIC | |
| SBS | Chr5 | 22145866 | A-G | HET | INTERGENIC | |
| SBS | Chr7 | 4713479 | C-T | HOMO | INTERGENIC | |
| SBS | Chr7 | 29459827 | C-T | HOMO | INTERGENIC | |
| SBS | Chr8 | 25781257 | A-C | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr9 | 4200965 | A-T | HET | INTERGENIC | |
| SBS | Chr9 | 4265706 | C-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr9 | 4648558 | T-C | HET | INTERGENIC | |
| SBS | Chr10 | 43559 | A-G | HET | INTERGENIC | |
| SBS | Chr10 | 4524801 | G-T | HOMO | INTRON | |
| SBS | Chr10 | 7384552 | T-C | HOMO | INTERGENIC | |
| SBS | Chr10 | 13848600 | T-G | HET | UTR_3_PRIME |
Deletions: 15
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr7 | 885001 | 1006000 | 121000 | 24 |
| Deletion | Chr7 | 1082001 | 1118000 | 36000 | 12 |
| Deletion | Chr3 | 1972765 | 1972766 | 1 | |
| Deletion | Chr1 | 2284607 | 2284613 | 6 | LOC_Os01g04930 |
| Deletion | Chr8 | 2460925 | 2460926 | 1 | |
| Deletion | Chr9 | 9208882 | 9208892 | 10 | |
| Deletion | Chr12 | 10651064 | 10651076 | 12 | |
| Deletion | Chr6 | 12137001 | 12155000 | 18000 | 4 |
| Deletion | Chr6 | 12353576 | 12357711 | 4135 | LOC_Os06g21390 |
| Deletion | Chr2 | 13293119 | 13293121 | 2 | |
| Deletion | Chr7 | 13428855 | 13428857 | 2 | |
| Deletion | Chr3 | 18267589 | 18267592 | 3 | |
| Deletion | Chr8 | 25775190 | 25775197 | 7 | |
| Deletion | Chr8 | 28404169 | 28404170 | 1 | |
| Deletion | Chr6 | 28919345 | 28919359 | 14 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 20056245 | 20056246 | 2 | |
| Insertion | Chr2 | 28012238 | 28012239 | 2 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr7 | 1005686 | 1140635 | LOC_Os07g03025 |
| Inversion | Chr9 | 4541525 | 4648708 | LOC_Os09g08660 |
| Inversion | Chr9 | 4648709 | 5477215 | LOC_Os09g10054 |
Translocations: 1
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 5325521 | Chr7 | 7856338 | LOC_Os07g13690 |