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Mutant Information

Variant Information

Single base substitutions: 22

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9585204	A-G	HET	INTERGENIC
SBS	Chr1	10313755	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g18360
SBS	Chr3	29242170	T-C	HET	INTERGENIC
SBS	Chr4	27730867	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g46770
SBS	Chr5	16319094	G-A	HET	SYNONYMOUS_CODING
SBS	Chr6	310236	C-T	HET	INTERGENIC
SBS	Chr6	23067089	T-C	HET	INTRON
SBS	Chr7	13432293	C-T	HET	INTERGENIC
SBS	Chr7	21244112	G-A	HOMO	INTERGENIC
SBS	Chr8	3424097	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g06200
SBS	Chr9	5773139	A-C	HET	INTERGENIC
SBS	Chr9	11173976	A-G	HET	INTRON
SBS	Chr9	14988892	A-C	HET	INTERGENIC
SBS	Chr10	5828868	C-T	HET	INTERGENIC
SBS	Chr10	8321549	T-A	HET	INTRON
SBS	Chr10	10994696	A-G	HET	INTRON
SBS	Chr10	11136974	G-A	HET	INTERGENIC
SBS	Chr10	18691051	A-C	HET	INTRON
SBS	Chr10	18752117	G-A	HET	INTRON
SBS	Chr11	3188762	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g06600
SBS	Chr11	13943003	G-T	HET	INTRON
SBS	Chr11	18311204	T-C	HET	INTERGENIC

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	1824610	1824612	2
Deletion	Chr4	2452412	2452419	7
Deletion	Chr1	3767779	3767780	1
Deletion	Chr12	4293908	4293909	1
Deletion	Chr6	5399735	5399779	44
Deletion	Chr2	6103645	6103646	1
Deletion	Chr4	8054978	8054991	13
Deletion	Chr6	8348085	8348088	3
Deletion	Chr9	9216787	9216804	17
Deletion	Chr11	9414267	9414271	4
Deletion	Chr12	9553128	9553134	6
Deletion	Chr5	10110001	10173000	63000	5
Deletion	Chr3	13908782	13908786	4
Deletion	Chr8	14154488	14154489	1
Deletion	Chr3	14606218	14606247	29
Deletion	Chr11	15113386	15113391	5
Deletion	Chr10	15487236	15487240	4	LOC_Os10g29790
Deletion	Chr9	15867158	15867160	2
Deletion	Chr11	16561653	16561684	31
Deletion	Chr8	17851939	17851963	24	LOC_Os08g29160
Deletion	Chr3	22850582	22850583	1
Deletion	Chr5	23266576	23266577	1	LOC_Os05g39620
Deletion	Chr7	24370506	24370507	1
Deletion	Chr1	26103567	26103568	1
Deletion	Chr2	26239410	26239419	9
Deletion	Chr12	26440506	26441179	673
Deletion	Chr4	29480872	29480876	4	LOC_Os04g49394

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	11499487	11499487	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	4147407	4271553	LOC_Os05g07710
Inversion	Chr4	27982702	28110963	LOC_Os04g47360
Inversion	Chr4	27982716	28110967	LOC_Os04g47360

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	26440544	Chr6	4264518	LOC_Os06g08564
Translocation	Chr12	26441164	Chr6	4264510	LOC_Os06g08564
Translocation	Chr7	27532074	Chr1	28241034	LOC_Os07g46130

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