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| Mutant Information |
|---|
| Mutant Name | FN-195 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-195 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 28
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 13319955 | G-C | HET | INTRON | |
| SBS | Chr1 | 18845021 | C-T | HET | INTERGENIC | |
| SBS | Chr1 | 2297881 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g04950 |
| SBS | Chr1 | 31316869 | G-A | HOMO | INTRON | |
| SBS | Chr1 | 36457007 | G-A | HET | INTERGENIC | |
| SBS | Chr10 | 476823 | A-G | HOMO | INTERGENIC | |
| SBS | Chr11 | 11141391 | T-A | HOMO | INTERGENIC | |
| SBS | Chr11 | 13370579 | C-T | HOMO | INTERGENIC | |
| SBS | Chr11 | 1538697 | C-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr11 | 9264492 | C-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr12 | 16730521 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os12g28290 |
| SBS | Chr12 | 21778501 | T-A | HET | INTERGENIC | |
| SBS | Chr2 | 30705972 | G-A | HET | INTERGENIC | |
| SBS | Chr3 | 17090610 | C-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 20747820 | G-T | HET | INTERGENIC | |
| SBS | Chr3 | 26107438 | A-T | HET | INTRON | |
| SBS | Chr3 | 3887473 | A-C | HET | INTERGENIC | |
| SBS | Chr4 | 17520264 | G-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os04g29469 |
| SBS | Chr4 | 21836866 | T-C | HET | INTRON | |
| SBS | Chr4 | 30128952 | A-T | HET | INTERGENIC | |
| SBS | Chr4 | 6753365 | G-A | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr4 | 6753366 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os04g12240 |
| SBS | Chr5 | 13249914 | G-C | HET | INTERGENIC | |
| SBS | Chr6 | 5913473 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os06g11280 |
| SBS | Chr7 | 22295868 | G-A | HET | INTERGENIC | |
| SBS | Chr8 | 5402516 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os08g09320 |
| SBS | Chr9 | 13801149 | A-G | HET | INTERGENIC | |
| SBS | Chr9 | 16256949 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os09g26760 |
Deletions: 19
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 124887 | 124888 | 1 | |
| Deletion | Chr8 | 3672718 | 3672723 | 5 | LOC_Os08g06480 |
| Deletion | Chr9 | 6479231 | 6479249 | 18 | |
| Deletion | Chr5 | 6619026 | 6619031 | 5 | |
| Deletion | Chr6 | 7275314 | 7275324 | 10 | |
| Deletion | Chr7 | 9699227 | 9699240 | 13 | |
| Deletion | Chr5 | 10648001 | 10670000 | 22000 | 2 |
| Deletion | Chr5 | 11297140 | 11297141 | 1 | |
| Deletion | Chr6 | 15562473 | 15562479 | 6 | |
| Deletion | Chr5 | 17690312 | 17690316 | 4 | |
| Deletion | Chr6 | 20282312 | 20283090 | 778 | |
| Deletion | Chr9 | 21535984 | 21535994 | 10 | |
| Deletion | Chr10 | 22414001 | 22440000 | 26000 | 4 |
| Deletion | Chr3 | 24672464 | 24672474 | 10 | |
| Deletion | Chr12 | 26129781 | 26129786 | 5 | LOC_Os12g42150 |
| Deletion | Chr7 | 28011579 | 28011580 | 1 | |
| Deletion | Chr2 | 31157936 | 31157943 | 7 | |
| Deletion | Chr3 | 34193968 | 34193978 | 10 | |
| Deletion | Chr1 | 36659001 | 36666000 | 7000 | LOC_Os01g63250 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 25200701 | 25200701 | 1 | |
| Insertion | Chr7 | 6640413 | 6640414 | 2 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr3 | 16559806 | 16678929 | 2 |
| Inversion | Chr1 | 36665841 | 37838619 | LOC_Os01g65210 |
No Translocation