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| Mutant Information |
|---|
| Mutant Name | FN-196 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-196 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 24
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 15822984 | C-T | HET | INTERGENIC | |
| SBS | Chr1 | 18055037 | A-G | HOMO | INTERGENIC | |
| SBS | Chr1 | 33398332 | C-T | HOMO | INTERGENIC | |
| SBS | Chr1 | 36469389 | A-G | HET | INTRON | |
| SBS | Chr1 | 8506395 | A-C | HET | INTERGENIC | |
| SBS | Chr1 | 944464 | G-A | HET | INTRON | |
| SBS | Chr10 | 12054690 | G-T | HOMO | INTERGENIC | |
| SBS | Chr10 | 16912438 | G-A | HET | INTERGENIC | |
| SBS | Chr11 | 24963387 | T-C | HOMO | INTERGENIC | |
| SBS | Chr12 | 109759 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g01190 |
| SBS | Chr12 | 18123321 | T-G | HET | INTERGENIC | |
| SBS | Chr12 | 19269759 | C-T | HET | INTERGENIC | |
| SBS | Chr12 | 19467535 | C-T | HET | INTERGENIC | |
| SBS | Chr12 | 4553251 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os12g08820 |
| SBS | Chr2 | 11371016 | G-A | HOMO | INTERGENIC | |
| SBS | Chr2 | 34963077 | A-G | HET | INTERGENIC | |
| SBS | Chr3 | 15824415 | C-T | HET | INTRON | |
| SBS | Chr3 | 4019303 | G-A | HET | INTERGENIC | |
| SBS | Chr4 | 7541119 | G-C | HET | SYNONYMOUS_CODING | |
| SBS | Chr5 | 12255342 | G-A | HOMO | INTERGENIC | |
| SBS | Chr7 | 14839163 | G-T | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr7 | 16692830 | A-G | HOMO | INTERGENIC | |
| SBS | Chr9 | 12882057 | A-T | HET | INTERGENIC | |
| SBS | Chr9 | 18832826 | C-T | HET | INTERGENIC |
Deletions: 17
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 2531588 | 2531592 | 4 | |
| Deletion | Chr7 | 4933727 | 4933737 | 10 | |
| Deletion | Chr10 | 5109632 | 5109641 | 9 | |
| Deletion | Chr8 | 5446072 | 5448147 | 2075 | LOC_Os08g09390 |
| Deletion | Chr8 | 7608573 | 7608578 | 5 | |
| Deletion | Chr11 | 10563755 | 10563758 | 3 | |
| Deletion | Chr6 | 10767595 | 10767602 | 7 | LOC_Os06g18940 |
| Deletion | Chr1 | 11232061 | 11233633 | 1572 | LOC_Os01g19800 |
| Deletion | Chr8 | 15090410 | 15090412 | 2 | |
| Deletion | Chr8 | 17076480 | 17076481 | 1 | LOC_Os08g28030 |
| Deletion | Chr8 | 18568308 | 18568341 | 33 | |
| Deletion | Chr10 | 19408479 | 19408490 | 11 | LOC_Os10g36310 |
| Deletion | Chr1 | 21380045 | 21380048 | 3 | |
| Deletion | Chr6 | 25941040 | 25941044 | 4 | |
| Deletion | Chr4 | 27578786 | 27578829 | 43 | |
| Deletion | Chr4 | 31238935 | 31238939 | 4 | |
| Deletion | Chr3 | 32075361 | 32075377 | 16 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 4633356 | 4633356 | 1 | |
| Insertion | Chr4 | 31490833 | 31490835 | 3 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr1 | 29048834 | 29396894 | |
| Inversion | Chr1 | 29053655 | 29396903 |
Translocations: 3
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 18831300 | Chr1 | 11233633 | LOC_Os01g19800 |
| Translocation | Chr11 | 18831314 | Chr1 | 11232064 | LOC_Os01g19800 |
| Translocation | Chr9 | 21400445 | Chr8 | 5448130 | 2 |