Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN-197 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-197 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 26
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 34377373 | G-A | HET | INTERGENIC | |
| SBS | Chr1 | 3701087 | T-C | HOMO | INTERGENIC | |
| SBS | Chr10 | 12129078 | C-T | HET | INTERGENIC | |
| SBS | Chr10 | 1736218 | G-A | HET | INTRON | |
| SBS | Chr11 | 24903267 | C-T | HET | INTERGENIC | |
| SBS | Chr12 | 17149909 | A-G | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr12 | 3418204 | C-G | HOMO | INTERGENIC | |
| SBS | Chr2 | 12730855 | C-A | HET | INTERGENIC | |
| SBS | Chr2 | 24859198 | G-A | HET | INTRON | |
| SBS | Chr3 | 2814563 | C-T | HET | INTERGENIC | |
| SBS | Chr3 | 4681998 | C-T | HET | INTERGENIC | |
| SBS | Chr4 | 17494702 | C-A | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr4 | 34999837 | G-A | HET | INTERGENIC | |
| SBS | Chr4 | 4474778 | G-A | HET | INTERGENIC | |
| SBS | Chr5 | 1087772 | G-A | HET | INTERGENIC | |
| SBS | Chr5 | 6904830 | T-C | HET | INTERGENIC | |
| SBS | Chr6 | 12706045 | G-T | HOMO | INTERGENIC | |
| SBS | Chr6 | 23811637 | C-A | HET | INTERGENIC | |
| SBS | Chr6 | 24373603 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g40870 |
| SBS | Chr6 | 26212512 | G-A | HET | INTERGENIC | |
| SBS | Chr6 | 28547663 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os06g47100 |
| SBS | Chr7 | 12362843 | G-A | HET | INTERGENIC | |
| SBS | Chr7 | 17027370 | G-T | HOMO | INTERGENIC | |
| SBS | Chr8 | 15617602 | G-A | HET | INTERGENIC | |
| SBS | Chr9 | 19910792 | T-C | HET | INTRON | |
| SBS | Chr9 | 8311587 | C-T | HET | INTERGENIC |
Deletions: 10
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 696024 | 741599 | 45575 | 6 |
| Deletion | Chr5 | 1087758 | 1087759 | 1 | |
| Deletion | Chr4 | 2178001 | 2342000 | 164000 | 29 |
| Deletion | Chr4 | 2367001 | 2564000 | 197000 | 22 |
| Deletion | Chr3 | 11002009 | 11002021 | 12 | |
| Deletion | Chr3 | 11526513 | 11526514 | 1 | LOC_Os03g20380 |
| Deletion | Chr6 | 15900534 | 15900538 | 4 | |
| Deletion | Chr9 | 16940863 | 16940872 | 9 | |
| Deletion | Chr7 | 19422585 | 19422589 | 4 | |
| Deletion | Chr2 | 31458535 | 31458536 | 1 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 23208034 | 23208036 | 3 | |
| Insertion | Chr4 | 4266037 | 4266038 | 2 | |
| Insertion | Chr4 | 4450296 | 4450297 | 2 | |
| Insertion | Chr9 | 21549192 | 21549192 | 1 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr10 | 732668 | 1749561 | LOC_Os10g03850 |
| Inversion | Chr5 | 1032514 | 1101904 | LOC_Os05g02850 |
Translocations: 1
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr5 | 3339135 | Chr3 | 31021156 | 2 |