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Mutant Information

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11764	T-G	HET	INTERGENIC
SBS	Chr1	976313	C-T	HET	INTERGENIC
SBS	Chr1	3399760	A-G	HET	INTRON
SBS	Chr1	7753323	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g13820
SBS	Chr1	7827317	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g13960
SBS	Chr1	7827318	C-T	HET	SYNONYMOUS_CODING
SBS	Chr1	14312546	G-T	HET	INTRON
SBS	Chr1	16895157	T-C	HET	INTERGENIC
SBS	Chr1	26427216	A-T	HET	INTERGENIC
SBS	Chr1	38444668	C-T	HOMO	INTRON
SBS	Chr2	15091183	G-A	HET	INTRON
SBS	Chr2	35052701	C-G	HET	INTERGENIC
SBS	Chr3	1692805	G-T	HET	INTERGENIC
SBS	Chr3	10020697	A-G	HET	INTERGENIC
SBS	Chr3	13419810	G-A	HET	INTERGENIC
SBS	Chr3	15583761	G-A	HET	SYNONYMOUS_CODING
SBS	Chr3	20805039	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g37500
SBS	Chr3	28932363	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g50670
SBS	Chr3	28932364	C-A	HOMO	SYNONYMOUS_CODING
SBS	Chr3	35179301	A-C	HET	INTRON
SBS	Chr3	35190638	A-G	HET	INTERGENIC
SBS	Chr4	4381653	A-G	HET	INTERGENIC
SBS	Chr4	9423316	G-A	HET	INTRON
SBS	Chr4	27065256	A-G	HET	INTERGENIC
SBS	Chr5	1638972	G-A	HOMO	INTERGENIC
SBS	Chr5	10959833	G-A	HET	INTERGENIC
SBS	Chr5	23934427	C-A	HOMO	INTRON
SBS	Chr7	12704136	C-T	HOMO	INTERGENIC
SBS	Chr7	16120396	G-T	HOMO	INTERGENIC
SBS	Chr7	16703009	G-A	HOMO	INTERGENIC
SBS	Chr8	22811119	C-T	HET	INTRON
SBS	Chr9	50708	G-A	HET	INTERGENIC
SBS	Chr9	2662234	C-T	HET	INTERGENIC
SBS	Chr9	3394099	C-T	HET	INTRON
SBS	Chr10	12920910	G-A	HET	INTERGENIC
SBS	Chr11	27038164	G-T	HET	INTERGENIC

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	2390112	2390116	4
Deletion	Chr5	2822324	2822326	2
Deletion	Chr3	4514082	4514085	3	LOC_Os03g08740
Deletion	Chr2	7597437	7597440	3
Deletion	Chr6	7728883	7728886	3
Deletion	Chr3	10021141	10021143	2
Deletion	Chr11	15174815	15174817	2
Deletion	Chr7	15406050	15406051	1
Deletion	Chr2	19118299	19118304	5	LOC_Os02g32360
Deletion	Chr12	19238532	19238557	25
Deletion	Chr12	19380737	19401366	20629	3
Deletion	Chr12	19884932	19884941	9
Deletion	Chr2	21048131	21048132	1
Deletion	Chr3	21226300	21226302	2
Deletion	Chr2	22722489	22722490	1
Deletion	Chr2	23415457	23415459	2
Deletion	Chr2	23638706	23638715	9
Deletion	Chr2	23641552	23641553	1
Deletion	Chr5	23937001	24060000	123000	24
Deletion	Chr3	24579609	24579611	2
Deletion	Chr1	30471740	30471742	2

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	3480697	3480697	1
Insertion	Chr7	21573553	21573553	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	14412785	14494442
Inversion	Chr5	23937259	24072992	LOC_Os05g41090
Inversion	Chr5	24060256	24073315	LOC_Os05g41090
Inversion	Chr3	34241120	34799005	2
Inversion	Chr3	34780124	34799004	LOC_Os03g61280

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	27032042	Chr3	14494429

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