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Mutant Information

Mutant Name	FN-20 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-20 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 11

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15900968	G-C	Homo	INTERGENIC
SBS	Chr1	39211260	C-T	Homo	INTERGENIC
SBS	Chr2	5504339	A-T	Homo	UTR_3_PRIME
SBS	Chr2	24906512	C-T	Homo	INTERGENIC
SBS	Chr2	26417803	T-A	Homo	INTERGENIC
SBS	Chr3	767187	G-A	Homo	STOP_GAINED	LOC_Os03g02260
SBS	Chr3	11134227	A-G	Homo	INTERGENIC
SBS	Chr3	22419102	A-T	Homo	INTERGENIC
SBS	Chr5	12627675	A-G	Homo	SYNONYMOUS_CODING
SBS	Chr6	20001693	T-A	Homo	INTERGENIC
SBS	Chr6	21365431	C-T	Homo	INTERGENIC

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	3362486	3363473	987	2
Deletion	Chr5	5163048	5163050	2
Deletion	Chr5	6880242	6880245	3
Deletion	Chr3	10459158	10459179	21	LOC_Os03g18680
Deletion	Chr10	12089547	12089549	2
Deletion	Chr7	19759559	19759563	4
Deletion	Chr8	19899906	19899908	2
Deletion	Chr6	20001684	20001688	4
Deletion	Chr6	21207780	21207781	1
Deletion	Chr5	24045119	24045120	1
Deletion	Chr1	33601470	33601476	6	LOC_Os01g58100
Deletion	Chr1	33661088	33661101	13

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	25245398	25245399	2
Insertion	Chr11	28474874	28474875	2
Insertion	Chr9	16769920	16769920	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	2261517	3177864	2
Inversion	Chr7	18110283	18124079	LOC_Os07g30600

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	3362486	Chr2	6679034	2
Translocation	Chr7	3363470	Chr2	6679024	2
Translocation	Chr12	8335893	Chr1	27308631	LOC_Os01g47740