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Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1081568	C-A	HET	UTR_5_PRIME
SBS	Chr1	17766350	T-C	HET	INTERGENIC
SBS	Chr1	22202608	A-G	HOMO	INTERGENIC
SBS	Chr1	26418162	G-T	HOMO	INTERGENIC
SBS	Chr1	42331427	T-G	HET	INTRON
SBS	Chr11	23509455	T-G	HET	INTRON
SBS	Chr12	8376825	G-T	HOMO	INTRON
SBS	Chr2	15587847	T-C	HET	UTR_3_PRIME
SBS	Chr2	18545096	A-C	HOMO	INTERGENIC
SBS	Chr2	18549397	C-T	HOMO	INTRON
SBS	Chr2	18549398	G-T	HOMO	INTRON
SBS	Chr2	420184	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g01750
SBS	Chr3	18162644	A-T	HOMO	INTERGENIC
SBS	Chr3	19310737	C-A	HOMO	INTRON
SBS	Chr3	8146835	G-C	HET	INTERGENIC
SBS	Chr4	17419778	G-A	HET	INTERGENIC
SBS	Chr4	24414994	G-A	HET	INTERGENIC
SBS	Chr4	25093511	A-T	HET	INTERGENIC
SBS	Chr4	4468851	A-G	HET	INTERGENIC
SBS	Chr5	27915055	C-T	HET	INTERGENIC
SBS	Chr5	3537961	T-C	HET	INTERGENIC
SBS	Chr6	1623146	C-T	HET	INTERGENIC
SBS	Chr6	1650948	G-T	HET	SYNONYMOUS_CODING
SBS	Chr6	17364850	G-A	HOMO	INTERGENIC
SBS	Chr6	24377401	G-A	HOMO	INTERGENIC
SBS	Chr6	7760386	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os06g13920
SBS	Chr7	5786796	C-A	HET	INTERGENIC
SBS	Chr8	21133735	G-A	HET	INTERGENIC
SBS	Chr8	27746761	C-T	HET	INTERGENIC
SBS	Chr8	8552832	G-A	HOMO	SYNONYMOUS_CODING

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	168365	168368	3	LOC_Os12g01290
Deletion	Chr8	618783	618784	1
Deletion	Chr4	739683	739690	7
Deletion	Chr11	1776363	1776365	2	LOC_Os11g04290
Deletion	Chr10	1839001	1880000	41000	6
Deletion	Chr6	2138698	2138709	11	LOC_Os06g04870
Deletion	Chr12	2893728	2893733	5
Deletion	Chr3	5367015	5367016	1
Deletion	Chr1	7973336	7973337	1
Deletion	Chr2	12377193	12377202	9
Deletion	Chr2	12539001	12557000	18000	4
Deletion	Chr5	14404119	14404131	12	LOC_Os05g24860
Deletion	Chr2	16096447	16096459	12
Deletion	Chr12	18164792	18164799	7
Deletion	Chr11	20071318	20103754	32436	5
Deletion	Chr7	29226039	29226040	1
Deletion	Chr4	29515180	29515181	1	LOC_Os04g49490

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	8254837	8254838	2
Insertion	Chr5	3849568	3849569	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	11483881	11486009	2
Inversion	Chr2	11483905	11776049	2
Inversion	Chr2	11486049	12557657	LOC_Os02g19650
Inversion	Chr2	11775477	12539029	LOC_Os02g20000
Inversion	Chr1	23157262	27995467

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	26283715	Chr2	11775490	LOC_Os02g20000

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